Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1291 ATGGGGAGTGTTACCAATCGAAGACAAGATTTCGTATCCAAATTTTGGGTCGAAACTCAGAAGCTATGGCTAATCGTTGGCCCTTCCATATTCAGCCGTGTCTCTTCTTACACCATGAATATCATCACTCAAGCTTTCGCTGGCCGTTTAGGCGATGTCCAACTCGCTTCCATTTCAATCGCCAACACTGTAATCGTCGGTTTCAATTTCGGGCTCTTGTTAGGGATGGCAAGTGCATTAGAGACACTATGTGGACAAGCATATGGAGCAAAGAGATATCATATGTTAGGAATTTACTTGCAACGTTCATGGGTAGTACTTTCCCTTTGTTGTTTCTTGTTACTCCCTTTTTATTTTTACGCTACACCTGTTCTGAAACTGCTTGGCCAAGACGACGATGTAGCAGAGCAAGCAGGGGTAGTAGCGATTTGGTTAATACCACTTCATTTCAGCTTTGCGTTTCAGTTTCCATTACAAAGGTTTTTGCAATGCCAACTGAAAACCCAAGTGATTGCTTGGGTTTCTTTTGTAGGATTAGTTATGAATGTTTTGGCTAGTTGGGTTTTCATATATGTATTGGAATTTGGGGTAATTGGAGCAGCTATAGCTTTAGATATTTCTTGGTGGGTTCTGGTTTTGGGATTGTATATCTATAGTGTTGGTGGTTGGTGCCCTTTAACTTGGACTGGCTTCTCTTCTCAAGCCTTTCAAGGTCTCTGGGATTTCACTAAACTCTCCATTTCTGCTGGCCTCATGCTCTGCTCGGAGAATTGGTACTACAGGATATTAGTACTGATGACAGGGAAGTTAAAGAATGCTACTATAGCTGTGGATGCATTATCCATATGTATGAGCATCAATGGATGGGAGATGATGATTCCTTTAGCATTCTTCGCTGGCATTGGAGTTAGAGTGGCAAATGAGCTTGGTGCTGGGAATGGGAAAGGAGCGAAATTTGCTACAATTGTATCAGTGGTGCAATCAACAGTGATTGGTGTAGTGATATGTGTTGTTATAATGATATTTCATGATAAGATAGCCTTTATCTTCACAGACAGCAGTAGTGTGGTAGAGGCTGTGGATTCACTCTCAAGTTTGCTAGCCATCACCATTCTCTTGAACAGTATCCAACCCGTTCTATCAGGGGTGGCAGTTGGATCAGGTTGGCAATCTTGGGTTGCATACATAAATCTTGGCTGCTATTATCTTATTGGCCTCCCCCTTGGTTTCATCATGGAATGGGTTTTCCACTCTGGTGTGCTGGGAATTTGGGGTGGAATGATATTTGGTGGCACTGCAGTTCAAACCATAATATTAGTGATCATCACCATGAGAACTAATTGGGAACAAGAGGCGGAGAAAGCACAAGAGCATGTAGAAGAATGGTCCAGTCCTCAAGAAAACGAGAAGCCTCTTCTCGCCTAA 1425 42.6 MGSVTNRRQDFVSKFWVETQKLWLIVGPSIFSRVSSYTMNIITQAFAGRLGDVQLASISIANTVIVGFNFGLLLGMASALETLCGQAYGAKRYHMLGIYLQRSWVVLSLCCFLLLPFYFYATPVLKLLGQDDDVAEQAGVVAIWLIPLHFSFAFQFPLQRFLQCQLKTQVIAWVSFVGLVMNVLASWVFIYVLEFGVIGAAIALDISWWVLVLGLYIYSVGGWCPLTWTGFSSQAFQGLWDFTKLSISAGLMLCSENWYYRILVLMTGKLKNATIAVDALSICMSINGWEMMIPLAFFAGIGVRVANELGAGNGKGAKFATIVSVVQSTVIGVVICVVIMIFHDKIAFIFTDSSSVVEAVDSLSSLLAITILLNSIQPVLSGVAVGSGWQSWVAYINLGCYYLIGLPLGFIMEWVFHSGVLGIWGGMIFGGTAVQTIILVIITMRTNWEQEAEKAQEHVEEWSSPQENEKPLLA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24698296 24700900 - CcPI632755_08g012910.1 Cco08g1291 185765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1291 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 451 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cco08g1291 474 NCBIfam MATE family efflux transporter 28 424 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco08g1291 474 CDD MATE_eukaryotic 18 454 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cco08g1291 474 MobiDBLite consensus disorder prediction 455 474 - -
Cco08g1291 474 Pfam MatE 250 411 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco08g1291 474 Pfam MatE 28 188 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1291 K03327 - - csv:101218581 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1291 Cco-Chr8:24698296 Cco11g1294 Cco-Chr11:25480679 1.20E-68 dispersed
Cco01g0102 Cco-Chr1:841935 Cco08g1291 Cco-Chr8:24698296 3.60E-116 transposed
Cco01g1595 Cco-Chr1:28640536 Cco08g1291 Cco-Chr8:24698296 4.10E-120 transposed
Cco03g0534 Cco-Chr3:5483442 Cco08g1291 Cco-Chr8:24698296 8.90E-102 transposed
Cco05g2838 Cco-Chr5:36027466 Cco08g1291 Cco-Chr8:24698296 8.80E-126 transposed
Cco06g0362 Cco-Chr6:4063349 Cco08g1291 Cco-Chr8:24698296 3.20E-120 transposed
Cco10g0807 Cco-Chr10:16346348 Cco08g1291 Cco-Chr8:24698296 2.40E-181 transposed
Cco04g1613 Cco-Chr4:31454349 Cco08g1291 Cco-Chr8:24698296 3.70E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129