Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1296 ATGAAACGCATCGGCTGGCTAGGACTGTGCCGGCGGCAATTACTCTCATCTGTAGGCGTAGAGTCGTCCATTGATCCACGATTCCCGCTTGGAAAAGTTTCATCGTTACGCCAGTTTCTTTCTTGTGCCCGAGCGTTGCAATCATTCCCTTCTGCCGTCGTGAAAGCTTCTGACTTTGCCACAGCATTACCGCCGAGTAGATGTTTCATACATACTACAGGCTCATGTCATTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACCCAATGCCAGTCGAGAAGAGGTTAAAAAGGCGTACCATGCGTTGGCGAAAAAGTACCATCCAGATGCAAATAAGAACAATCCTTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCGTGGTGGAGAATTTGAAAATCTAGGGTTTGGTGCTGGTGACGCAGATGGGTTTAGCTATACTTATCGAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTACCTCAGATATTCAGGTTGACCTGTCATTATCTTTTACCGAAGCTGCAAAAGGATGCACAAAGCATTTGTCCTTTGATGCTTTTGTTCCCTGTGACTCTTGCTATGGGCGTGGCTATCCAGTAAATGCAACGAAAAGAAGTTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCCTTTAAAGCAACATGCACCACTTGCAAAGGATCAGGTCAAATCATTAAGGAATTGTGCGTGCAATGCAGGGGAATGGGGGTTGTGGAGGGTGTCAAGGAGGTTACAGTTACTATACCTGCTGGGGTTGATTCCGAAGATACAATTCGTGTACCAGAAGCTGGTAATAGTGGTGGACGAGAAAGTCATCCTGGCAACTTGATCATTAAATTGAAGGTTGCTGAAGATCGTGTCTTTAAGAGGGATGGTGTGGATATTTATGTGGATTCCAATATCAGCTTTACTCAAGCTATTCTTGGTGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATACAAATAAATATACCAAAGGGCGTTCAGCCAGGACAACTCTTAGTACTGAGAGGGAAAGGATTGCCAAAACATGGGCTTTTTGTTGATCGTGGAGATCAATATGTGCGGTTCCGTATTAAATTTCCAACTGCAATAAGTGAACGCCAACGTGCCATTTTAGAAGAGTTTGCTGAAGAAGAAATAAAGAATGGGATTGACAACTCAAGTGAAGCAAGTTGGTGGCAACGAATTCTTAACCGTGTTGGAGAACCTATGTTTATAGATACATGGTATAAGGTCAATTTTTCAGTACCTGGGTTGCAGTTTCAAATTTGTAAAGATTACCCGAGCTACATTACACTTGTTGAGAAAACTTGCATAGATATTACATTGAGTAGATGGAAGATCAATGGATCTCTTCGCTGGAAGGAAGTTCTTTCTTTTCTTCGTTCCTTCACAAGCTTTCCTGTAGGTTTGATCCATTACTTTGGAGATGCTCAGCGGCTTAGGTTTTTGCTATGA 1590 43.02 MKRIGWLGLCRRQLLSSVGVESSIDPRFPLGKVSSLRQFLSCARALQSFPSAVVKASDFATALPPSRCFIHTTGSCHSIERDYYEILGVQPNASREEVKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRRGGEFENLGFGAGDADGFSYTYRTHFSDSFQKIFSEIFEHETSRFTSDIQVDLSLSFTEAAKGCTKHLSFDAFVPCDSCYGRGYPVNATKRSCPTCRGLGRVTIPPFKATCTTCKGSGQIIKELCVQCRGMGVVEGVKEVTVTIPAGVDSEDTIRVPEAGNSGGRESHPGNLIIKLKVAEDRVFKRDGVDIYVDSNISFTQAILGGKVEVPTLSGRIQINIPKGVQPGQLLVLRGKGLPKHGLFVDRGDQYVRFRIKFPTAISERQRAILEEFAEEEIKNGIDNSSEASWWQRILNRVGEPMFIDTWYKVNFSVPGLQFQICKDYPSYITLVEKTCIDITLSRWKINGSLRWKEVLSFLRSFTSFPVGLIHYFGDAQRLRFLL 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24746253 24757228 - CcPI632755_08g012960.1 Cco08g1296 185770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1296 529 Pfam DnaJ domain 82 144 IPR001623 -
Cco08g1296 529 CDD DnaJ 82 136 IPR001623 -
Cco08g1296 529 Gene3D - 326 434 - -
Cco08g1296 529 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Cco08g1296 529 Gene3D DnaJ domain 79 192 IPR036869 -
Cco08g1296 529 ProSiteProfiles Zinc finger CR-type profile. 209 283 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cco08g1296 529 SUPERFAMILY HSP40/DnaJ peptide-binding domain 193 338 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cco08g1296 529 SMART dnaj_3 81 139 IPR001623 -
Cco08g1296 529 FunFam Chaperone protein dnaJ 1, mitochondrial 325 433 - -
Cco08g1296 529 Gene3D - 193 322 - -
Cco08g1296 529 Pfam DnaJ central domain 222 278 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cco08g1296 529 Hamap Chaperone protein DnaJ [dnaJ]. 79 471 IPR012724 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0009408(InterPro)|GO:0051082(InterPro)
Cco08g1296 529 CDD DnaJ_C 193 406 - -
Cco08g1296 529 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 49 424 - GO:0005737(PANTHER)|GO:0042026(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)
Cco08g1296 529 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 416 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cco08g1296 529 SUPERFAMILY Chaperone J-domain 81 173 IPR036869 -
Cco08g1296 529 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 280 IPR036410 -
Cco08g1296 529 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Cco08g1296 529 Gene3D - 252 286 - -
Cco08g1296 529 Gene3D - 218 251 - -
Cco08g1296 529 CDD DnaJ_zf 222 278 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Cco08g1296 529 PRINTS DnaJ domain signature 102 117 IPR001623 -
Cco08g1296 529 PRINTS DnaJ domain signature 84 102 IPR001623 -
Cco08g1296 529 PRINTS DnaJ domain signature 139 158 IPR001623 -
Cco08g1296 529 PRINTS DnaJ domain signature 119 139 IPR001623 -
Cco08g1296 529 Pfam DnaJ C terminal domain 195 405 IPR002939 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1296 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1296 Cco-Chr8:24746253 Cco09g0372 Cco-Chr9:3382570 6.30E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30