Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1297 ATGCTCAGTCCTTCCACAGACCGGGCCTCTGGGGGTTTATTGAGTTATGCTTATGTTATGCATCGCTCAGTAATGGGCAATATTTATAACATCGGTTTTTCTGGACCCACAAAAGGGACGACCATGATATTCCTTCGCGCCAATGCGCAAGCAAAGCAATCGATGACGCGGTGGCTCCGCGCTTCAGAGGTCGCCGCTCGAACGGAATCGGTGATGACGACGTCTCTCCGCTCCGGCACCGGACGACACAGAATTCACTTCCCTCTCCAAGCAGGGAGGCCTAGATCGTCACTTACTTCGCCAGTCGACTCATTGGGCACCATTTCTGCTGTATCCTCCAAAACCCTACAAAACGGTAGCGATGATGGCAACTCCAATCAGGAATTTATGAAGCTCAAATTACCTCGGAATAGCGTGACCACCGTGCTTCAGAATGGCAACTGTGAAGCTCAAAGGACCTCAATCACTAAGCTTCGGCGTGTTGTCAAGAAACTCTGCAAATCGAAGCGCTTTGAGCGTGCGCTAGAGGTACTAATGTCGATGGAAACTCGAGATAATTTGCGTATGACCCCCGCTGAACATGCTCTCCGATTGGAATTGACAATCAAAGTGCACGGTTTACTGAAAGCTGAAGATTACTTCAATCAATTGCCCACCATAACCTCTAAGAAAGCTTCATCTCTCCCTCTTCTTCATGGTTATGTCAAAGAGAGAAACACAGAAAAAGCTGAGGCTTTCATGGTGAAGCTAAGGGACTTGGGACTGGTTGTGAACCATCATCTTTACAATGAGATGATGAAACTATATGTAGCCACAGCTCAAAATGAAAAAGTTCCTCTTGTTATAAGGGACATGAAGCAAAATCAAATACAGAGAAATGTTCTCTCTTACAACCTTTGGATGAATGCTTGTAATGAGGTATATGGGGTTGGGTCAGTGGAGTTGGTATTTGAAGAAATGCTGACTGATAAGAACGTTCAAGTGGGATGGAGCACTCTGTCTACCTTGGCTAAAGTTTACATACAGGAAGGCCTTGTTGACAAAGCGTTTGCAGCCTTAAAAGATGCAGAGAAGAAGCTATCCCCATGTAACAGGCTTGGATATTTCTTCTTAATCACATTATATGCCTCTTTGAAGGATAAGAAGGGAGTTTTTCGAGTTTGGAGAGCTAGTAAAGCTGTAAGTGGCAGACCCACTTGTGCTAATTACATGTGTATACTGCTGTGTTTGGTGAAGGTAGGAGAGATCGATGAGGCAGAGAAAGTATTCAAGGAATGGGAGTTGAATTGTCGTAACTATGACATTAGAGTTTCCAATGTTCTTTTGGGTGCATATGTGAGAAATGGATTGTTAGAGAAAGCCGAGTCATTGCATATGCGCACACTGGGGAGAGGTGGTAGTCCAAATTATAAAACATGGGAGATTCTCATGGAGGGGTGGGTGAGAAGCCAACATAACGTGGATGGAGCTATTAATTTTCTGAGAAAGATTTTGCTTCGTTGA 1503 44.64 MLSPSTDRASGGLLSYAYVMHRSVMGNIYNIGFSGPTKGTTMIFLRANAQAKQSMTRWLRASEVAARTESVMTTSLRSGTGRHRIHFPLQAGRPRSSLTSPVDSLGTISAVSSKTLQNGSDDGNSNQEFMKLKLPRNSVTTVLQNGNCEAQRTSITKLRRVVKKLCKSKRFERALEVLMSMETRDNLRMTPAEHALRLELTIKVHGLLKAEDYFNQLPTITSKKASSLPLLHGYVKERNTEKAEAFMVKLRDLGLVVNHHLYNEMMKLYVATAQNEKVPLVIRDMKQNQIQRNVLSYNLWMNACNEVYGVGSVELVFEEMLTDKNVQVGWSTLSTLAKVYIQEGLVDKAFAALKDAEKKLSPCNRLGYFFLITLYASLKDKKGVFRVWRASKAVSGRPTCANYMCILLCLVKVGEIDEAEKVFKEWELNCRNYDIRVSNVLLGAYVRNGLLEKAESLHMRTLGRGGSPNYKTWEILMEGWVRSQHNVDGAINFLRKILLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24757400 24759244 + CcPI632755_08g012970.1 Cco08g1297 185771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1297 500 Gene3D Tetratricopeptide repeat domain 365 499 IPR011990 GO:0005515(InterPro)
Cco08g1297 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Cco08g1297 500 Coils Coil 416 436 - -
Cco08g1297 500 Pfam PPR repeat 439 460 IPR002885 -
Cco08g1297 500 Pfam PPR repeat 403 426 IPR002885 -
Cco08g1297 500 Pfam PPR repeat 163 184 IPR002885 -
Cco08g1297 500 PANTHER OS12G0527900 PROTEIN 125 498 - GO:0005739(PANTHER)
Cco08g1297 500 Gene3D Tetratricopeptide repeat domain 153 364 IPR011990 GO:0005515(InterPro)
Cco08g1297 500 Pfam Pentatricopeptide repeat domain 250 304 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1297 Cco-Chr8:24757400 Cco03g0613 Cco-Chr3:6254740 3.10E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g471 . . . . . . . . Cmo05g00550 . . . . . Sed04g0176 . . Bhi04g00800 Tan02g2436 Cmetu03g0383 . Hepe10g0460 . Lcy13g1510 Cla08g01140 Cam08g1599 Cec08g1170 Cco08g1297 Clacu08g1299 . Cre08g1082 . . Cone17ag1195 . . . . Cme03g01832 . . . Bda13g01373 . Bpe14g00471 . . . . . . Cma05g00521 Car05g00472 . Cpe11g00462 . . . . . . . . . . . . . . . Lsi08g00998 Csa02g02182 Chy03g01335 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012851 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28