Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1301 ATGAATCAGTCTCAGCCACAGCCCCAGCCCGATCCATCAAATCCCCTCCCTCCAAAACCGTCGCACTCCGATCATCCGGATCCAATTACCGACCATCGCTCCGGCGACTATTCTCCCTATCCCAAGCTTGACCCTAGCGACGTCGCTCCCCCGCCCCTGCCAGAGAACTGGAGCACCGTCCCCATGGGCTCCCAATCCCAAAATCCACCTCCGCCTCCACCTCAAACTCAGCCAAATAGCGAGGCTCGTGCTCCGATCTACGAGGGAAATGCCACCACTCTGCCGACTGAAGCTAATCCCTATGTTTCTGCGGCTCCAGCCCATGGAAATCCTTCTTCCGCCAAGAATACGGTAGATTCCGTGAAGGTAATGCTTGGAAGATGGGGAAAGAGGGCAGTTGAGGCAACCAAGAAGGCCGAGGATCTTGCTGGGAATATGTGGCAGCACTTGAAAACAGGGCCTAGCTTTGCTGATGCTGCTGTGGGAAGAATTGCCCAGGGGACAAAAGTTCTCGCAGAAGGTGGTTATGAGAAAATCTTTCGACAGACTTTTGAGAATACACCTGAAGAGAAACTCCAGAAGGCATATGCATGCTACTTGTCCACATCAGCTGGTCCAGTGATGGGAACTTTGTACATATCAACGGCTAAACTTGCCTTTTGCAGTGATAATCCTCTTTCATACAAAGTGGGTGAGGAGACTCAATGGAGCCTGTACAAGGTGGTGATCCCACTACATCACCTAAAAGCAGTCAACCCATCAACAAGCAAAGCGAAACCGGCTGAAAAGTTCATACAGGTTATCTCCATTGACAATCATGAATTCTGGTTTATGGGCTTTGTATCTTATGATAGTGCAGTGAAAACTCTTCAAGAAGCCCTACATCCCAACAATCCGTTGTCTGTGTGA 909 50.17 MNQSQPQPQPDPSNPLPPKPSHSDHPDPITDHRSGDYSPYPKLDPSDVAPPPLPENWSTVPMGSQSQNPPPPPPQTQPNSEARAPIYEGNATTLPTEANPYVSAAPAHGNPSSAKNTVDSVKVMLGRWGKRAVEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFENTPEEKLQKAYACYLSTSAGPVMGTLYISTAKLAFCSDNPLSYKVGEETQWSLYKVVIPLHHLKAVNPSTSKAKPAEKFIQVISIDNHEFWFMGFVSYDSAVKTLQEALHPNNPLSV 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24783065 24785353 + CcPI632755_08g013010.1 Cco08g1301 185775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1301 302 Gene3D - 176 295 IPR011993 -
Cco08g1301 302 Pfam GRAM domain 179 294 IPR004182 -
Cco08g1301 302 SMART gram2001c 178 255 IPR004182 -
Cco08g1301 302 PANTHER GEM-LIKE PROTEIN 2 56 295 IPR037848 -
Cco08g1301 302 MobiDBLite consensus disorder prediction 1 116 - -
Cco08g1301 302 MobiDBLite consensus disorder prediction 65 79 - -
Cco08g1301 302 CDD PH-GRAM_GEM 189 294 - -
Cco08g1301 302 MobiDBLite consensus disorder prediction 8 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1301 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1538 Cco-Chr2:28024532 Cco08g1301 Cco-Chr8:24783065 2.30E-30 dispersed
Cco02g1539 Cco-Chr2:28030112 Cco08g1301 Cco-Chr8:24783065 2.30E-30 dispersed
Cco07g0213 Cco-Chr7:2167801 Cco08g1301 Cco-Chr8:24783065 8.30E-46 dispersed
Cco07g0215 Cco-Chr7:2172957 Cco08g1301 Cco-Chr8:24783065 1.70E-46 dispersed
Cco01g1611 Cco-Chr1:28816544 Cco08g1301 Cco-Chr8:24783065 3.70E-33 transposed
Cco07g1585 Cco-Chr7:29878794 Cco08g1301 Cco-Chr8:24783065 2.10E-46 transposed
Cco04g1611 Cco-Chr4:31443444 Cco08g1301 Cco-Chr8:24783065 8.00E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g478 . . . . . . . . Cmo05g00554 . . . . . Sed07g2378 . . Bhi04g00809 Tan02g2443 Cmetu10g1308 . Hepe10g0452 . Lcy13g1505 Cla08g01144 Cam08g1604 Cec08g1175 Cco08g1301 Clacu08g1303 . Cre08g1087 Cone6ag1542 Cone9ag1457 . . . . . Cme03g01828 Blo17g00103 Blo18g00113 . . Bpe02g01139 . Bma01g01388 . . . . . Cma05g00526 Car05g00475 . Cpe11g00464 . . . . . . . . . . . . . . . Lsi08g01002 Csa02g02186 Chy03g01331 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007813 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36