Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1302 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTACTACCATCAACAACAACAACAAATTTGTTCGTATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGCCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGTGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 738 50.68 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPPAAASGREEDDASNPSSSGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24790446 24791183 - CcPI632755_08g013020.1 Cco08g1302 185776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1302 245 Gene3D - 166 243 - -
Cco08g1302 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Cco08g1302 245 SUPERFAMILY Homeodomain-like 168 243 IPR009057 -
Cco08g1302 245 FunFam Zinc-finger homeodomain protein 2 175 243 - -
Cco08g1302 245 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cco08g1302 245 MobiDBLite consensus disorder prediction 148 181 - -
Cco08g1302 245 MobiDBLite consensus disorder prediction 20 51 - -
Cco08g1302 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cco08g1302 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cco08g1302 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco08g1302 245 MobiDBLite consensus disorder prediction 1 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1302 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1718 Cco-Chr4:32300706 Cco08g1302 Cco-Chr8:24790446 1.40E-42 dispersed
Cco08g1302 Cco-Chr8:24790446 Cco11g0011 Cco-Chr11:140881 2.00E-46 dispersed
Cco04g1610 Cco-Chr4:31428886 Cco08g1302 Cco-Chr8:24790446 1.40E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59800 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cco TF