Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1302 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTACTACCATCAACAACAACAACAAATTTGTTCGTATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGCCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGTGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 738 50.68 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPPAAASGREEDDASNPSSSGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24790446 24791183 - CcPI632755_08g013020.1 Cco08g1302 185776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1302 245 Gene3D - 166 243 - -
Cco08g1302 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Cco08g1302 245 SUPERFAMILY Homeodomain-like 168 243 IPR009057 -
Cco08g1302 245 FunFam Zinc-finger homeodomain protein 2 175 243 - -
Cco08g1302 245 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cco08g1302 245 MobiDBLite consensus disorder prediction 148 181 - -
Cco08g1302 245 MobiDBLite consensus disorder prediction 20 51 - -
Cco08g1302 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cco08g1302 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cco08g1302 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco08g1302 245 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1718 Cco-Chr4:32300706 Cco08g1302 Cco-Chr8:24790446 1.40E-42 dispersed
Cco08g1302 Cco-Chr8:24790446 Cco11g0011 Cco-Chr11:140881 2.00E-46 dispersed
Cco04g1610 Cco-Chr4:31428886 Cco08g1302 Cco-Chr8:24790446 1.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59800 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1302 - - - 0.0