Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1306 | ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATTCCAGTACGCGACTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGCTGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCATCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCCGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATTGATCATTACCTCCACAAGATTAACGACGACGAACTCTCTATCAAAATGTCGATCACCCAATCGATTCATCTACTCTTGAACATAATCCAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCCGAGCCCGAGCGGGGTGTTGGATGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG | 1266 | 45.73 | MMGPPPQTAAPSASAIVHVSAWDEKDSIPVRDFWALFFALIGRLEQREGKRKRGKGIFLAMAPSFDLAVSNLLCAEENCIFDNNDDDDETVVEEFLLAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHKINDDELSIKMSITQSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPPSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24875559 | 24879481 | - | CcPI632755_08g013060.1 | Cco08g1306 | 185780 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1306 | 421 | SUPERFAMILY | Cyclin-like | 245 | 355 | IPR036915 | - | |
Cco08g1306 | 421 | MobiDBLite | consensus disorder prediction | 395 | 415 | - | - | |
Cco08g1306 | 421 | Gene3D | - | 132 | 341 | - | - | |
Cco08g1306 | 421 | PANTHER | CYCLINS | 131 | 329 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cco08g1306 | 421 | FunFam | D6-type cyclin | 259 | 348 | - | - | |
Cco08g1306 | 421 | Pfam | Cyclin, N-terminal domain | 132 | 259 | IPR006671 | - | |
Cco08g1306 | 421 | CDD | CYCLIN_AtCycD-like_rpt1 | 159 | 257 | - | - | |
Cco08g1306 | 421 | SMART | cyclin_7 | 165 | 253 | IPR013763 | - | |
Cco08g1306 | 421 | CDD | CYCLIN_AtCycD-like_rpt2 | 262 | 350 | - | - | |
Cco08g1306 | 421 | Pfam | Cyclin, C-terminal domain | 262 | 354 | IPR004367 | - | |
Cco08g1306 | 421 | FunFam | D2/4-type cyclin | 143 | 258 | - | - | |
Cco08g1306 | 421 | SUPERFAMILY | Cyclin-like | 124 | 259 | IPR036915 | - | |
Cco08g1306 | 421 | SMART | Cyclin_C_2 | 262 | 387 | IPR004367 | - | |
Cco08g1306 | 421 | Gene3D | - | 143 | 260 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2287 | Cco-Chr5:31554252 | Cco08g1306 | Cco-Chr8:24875559 | 8.00E-33 | dispersed | |
Cco08g1306 | Cco-Chr8:24875559 | Cco10g0985 | Cco-Chr10:21305569 | 5.60E-49 | dispersed | |
Cco02g1238 | Cco-Chr2:23511289 | Cco08g1306 | Cco-Chr8:24875559 | 1.10E-30 | transposed | |
Cco05g2768 | Cco-Chr5:35521311 | Cco08g1306 | Cco-Chr8:24875559 | 3.50E-45 | transposed | |
Cco09g2265 | Cco-Chr9:36928527 | Cco08g1306 | Cco-Chr8:24875559 | 8.40E-48 | transposed | |
Cco04g1608 | Cco-Chr4:31411913 | Cco08g1306 | Cco-Chr8:24875559 | 2.20E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1306 | K18810 | - | csv:101216206 | 629.787 |