Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1306 ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATTCCAGTACGCGACTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGCTGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCATCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCCGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATTGATCATTACCTCCACAAGATTAACGACGACGAACTCTCTATCAAAATGTCGATCACCCAATCGATTCATCTACTCTTGAACATAATCCAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCCGAGCCCGAGCGGGGTGTTGGATGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1266 45.73 MMGPPPQTAAPSASAIVHVSAWDEKDSIPVRDFWALFFALIGRLEQREGKRKRGKGIFLAMAPSFDLAVSNLLCAEENCIFDNNDDDDETVVEEFLLAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHKINDDELSIKMSITQSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPPSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24875559 24879481 - CcPI632755_08g013060.1 Cco08g1306 185780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1306 421 SUPERFAMILY Cyclin-like 245 355 IPR036915 -
Cco08g1306 421 MobiDBLite consensus disorder prediction 395 415 - -
Cco08g1306 421 Gene3D - 132 341 - -
Cco08g1306 421 PANTHER CYCLINS 131 329 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco08g1306 421 FunFam D6-type cyclin 259 348 - -
Cco08g1306 421 Pfam Cyclin, N-terminal domain 132 259 IPR006671 -
Cco08g1306 421 CDD CYCLIN_AtCycD-like_rpt1 159 257 - -
Cco08g1306 421 SMART cyclin_7 165 253 IPR013763 -
Cco08g1306 421 CDD CYCLIN_AtCycD-like_rpt2 262 350 - -
Cco08g1306 421 Pfam Cyclin, C-terminal domain 262 354 IPR004367 -
Cco08g1306 421 FunFam D2/4-type cyclin 143 258 - -
Cco08g1306 421 SUPERFAMILY Cyclin-like 124 259 IPR036915 -
Cco08g1306 421 SMART Cyclin_C_2 262 387 IPR004367 -
Cco08g1306 421 Gene3D - 143 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2287 Cco-Chr5:31554252 Cco08g1306 Cco-Chr8:24875559 8.00E-33 dispersed
Cco08g1306 Cco-Chr8:24875559 Cco10g0985 Cco-Chr10:21305569 5.60E-49 dispersed
Cco02g1238 Cco-Chr2:23511289 Cco08g1306 Cco-Chr8:24875559 1.10E-30 transposed
Cco05g2768 Cco-Chr5:35521311 Cco08g1306 Cco-Chr8:24875559 3.50E-45 transposed
Cco09g2265 Cco-Chr9:36928527 Cco08g1306 Cco-Chr8:24875559 8.40E-48 transposed
Cco04g1608 Cco-Chr4:31411913 Cco08g1306 Cco-Chr8:24875559 2.20E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1306 K18810 - csv:101216206 629.787