Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1308 | ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGACTGGAATTCGATACAATGGAGTCGACAACGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAGCTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCGGCAGTCGGATTTTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCAAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGTTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCAACTACAATCTGTATGCATGGGTCCCCGGCTTTATTGGAGATTATCGTTACGATGCTCTGATCAACATTACAGAAGGCAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGCCTATGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACCGTTGGTGTCAGTGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACTTACAAGCTTCGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTACAAGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGAGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGCCCTTTTCAAGCCATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA | 1926 | 48.75 | MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTAGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVKSWPYSFPASDDFPKSNQRGNISGRLFVKDSYVSEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGNYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLRVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24900713 | 24907035 | + | CcPI632755_08g013080.1 | Cco08g1308 | 185782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1308 | 641 | CDD | RGL4_N | 8 | 293 | - | - | |
Cco08g1308 | 641 | FunFam | Rhamnogalacturonate lyase B | 329 | 428 | - | - | |
Cco08g1308 | 641 | Gene3D | - | 5 | 301 | IPR014718 | GO:0030246(InterPro) | |
Cco08g1308 | 641 | SUPERFAMILY | Galactose-binding domain-like | 439 | 629 | IPR008979 | - | |
Cco08g1308 | 641 | Gene3D | - | 329 | 429 | - | - | |
Cco08g1308 | 641 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 632 | IPR051850 | - | |
Cco08g1308 | 641 | Gene3D | - | 439 | 629 | - | - | |
Cco08g1308 | 641 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 628 | IPR029411 | - | |
Cco08g1308 | 641 | CDD | RGL4_M | 332 | 431 | IPR029413 | - | |
Cco08g1308 | 641 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 427 | IPR029413 | - | |
Cco08g1308 | 641 | SUPERFAMILY | Galactose mutarotase-like | 11 | 292 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cco08g1308 | 641 | SUPERFAMILY | Starch-binding domain-like | 330 | 430 | IPR013784 | GO:0030246(InterPro) | |
Cco08g1308 | 641 | CDD | RGL4_C | 443 | 629 | - | - | |
Cco08g1308 | 641 | Pfam | Rhamnogalacturonate lyase family | 6 | 201 | IPR010325 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1308 | Cco-Chr8:24900713 | Cco11g1524 | Cco-Chr11:28093468 | 5.90E-284 | dispersed | |
Cco04g1971 | Cco-Chr4:33967151 | Cco08g1308 | Cco-Chr8:24900713 | 7.30E-202 | transposed | |
Cco11g1522 | Cco-Chr11:28070757 | Cco08g1308 | Cco-Chr8:24900713 | 3.60E-265 | wgd | |
Cco04g1583 | Cco-Chr4:31210125 | Cco08g1308 | Cco-Chr8:24900713 | 2.30E-217 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1308 | K18195 | - | csv:101215720 | 1244.95 |