Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1313 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTCAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGATCTCAGAATTTAGTTTCTCTCTCTGTTTTCCTGGTTATGCCATGTTTTTTCTATCATTGAGTTGTAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATCAGCTCTTGTGTTTCATTGGGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCACATGGTACAAGCTGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGCACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGCAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACTGATATAGACATCCCCACTAACTTTGATTAG 1269 47.52 MAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKISEFSFSLCFPGYAMFFLSLSCSMKFCCQTLYPQSFMLWQSALVFHWEHAHLVTTHRIVGCLHDHMVQAVLLLLGGRDVPTGVPTMEAPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24991858 24998443 - CcPI632755_08g013130.1 Cco08g1313 185787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1313 422 CDD ZnF_GATA 273 317 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 Pfam GATA zinc finger 274 310 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 ProSiteProfiles GATA-type zinc finger domain profile. 268 316 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 269 318 - -
Cco08g1313 422 MobiDBLite consensus disorder prediction 24 46 - -
Cco08g1313 422 ProSitePatterns GATA-type zinc finger domain. 274 301 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 PANTHER GATA TRANSCRIPTION FACTOR 28 16 360 IPR045280 GO:0006355(InterPro)
Cco08g1313 422 SMART GATA_3 268 321 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 MobiDBLite consensus disorder prediction 344 422 - -
Cco08g1313 422 Pfam CCT motif 203 244 IPR010402 GO:0005515(InterPro)
Cco08g1313 422 ProSiteProfiles Tify domain profile. 69 104 IPR010399 -
Cco08g1313 422 ProSiteProfiles CCT domain profile. 203 245 IPR010402 GO:0005515(InterPro)
Cco08g1313 422 Gene3D - 266 324 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1313 Cco-Chr8:24991858 Cco09g0161 Cco-Chr9:1435788 1.70E-45 dispersed
Cco08g1313 Cco-Chr8:24991858 Cco08g1314 Cco-Chr8:25001798 8.40E-37 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco06g0656 . 1 180 Tify Gene Family AT4G14713 53.6 1.2e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59801 PF06203 CCT 1.70E-13 CL0281 Cco TF