Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1313 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTCAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGATCTCAGAATTTAGTTTCTCTCTCTGTTTTCCTGGTTATGCCATGTTTTTTCTATCATTGAGTTGTAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATCAGCTCTTGTGTTTCATTGGGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCACATGGTACAAGCTGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGCACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGCAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACTGATATAGACATCCCCACTAACTTTGATTAG 1269 47.52 MAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKISEFSFSLCFPGYAMFFLSLSCSMKFCCQTLYPQSFMLWQSALVFHWEHAHLVTTHRIVGCLHDHMVQAVLLLLGGRDVPTGVPTMEAPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24991858 24998443 - CcPI632755_08g013130.1 Cco08g1313 185787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1313 422 CDD ZnF_GATA 273 317 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 Pfam GATA zinc finger 274 310 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 ProSiteProfiles GATA-type zinc finger domain profile. 268 316 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 269 318 - -
Cco08g1313 422 MobiDBLite consensus disorder prediction 24 46 - -
Cco08g1313 422 ProSitePatterns GATA-type zinc finger domain. 274 301 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 PANTHER GATA TRANSCRIPTION FACTOR 28 16 360 IPR045280 GO:0006355(InterPro)
Cco08g1313 422 SMART GATA_3 268 321 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1313 422 MobiDBLite consensus disorder prediction 344 422 - -
Cco08g1313 422 Pfam CCT motif 203 244 IPR010402 GO:0005515(InterPro)
Cco08g1313 422 ProSiteProfiles Tify domain profile. 69 104 IPR010399 -
Cco08g1313 422 ProSiteProfiles CCT domain profile. 203 245 IPR010402 GO:0005515(InterPro)
Cco08g1313 422 Gene3D - 266 324 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1313 Cco-Chr8:24991858 Cco09g0161 Cco-Chr9:1435788 1.70E-45 dispersed
Cco08g1313 Cco-Chr8:24991858 Cco08g1314 Cco-Chr8:25001798 8.40E-37 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59801 PF06203 CCT 1.70E-13 CL0281 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1313 - - - 0.0