Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1313 | ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTCAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGATCTCAGAATTTAGTTTCTCTCTCTGTTTTCCTGGTTATGCCATGTTTTTTCTATCATTGAGTTGTAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATCAGCTCTTGTGTTTCATTGGGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCACATGGTACAAGCTGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGCACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGCAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACTGATATAGACATCCCCACTAACTTTGATTAG | 1269 | 47.52 | MAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKISEFSFSLCFPGYAMFFLSLSCSMKFCCQTLYPQSFMLWQSALVFHWEHAHLVTTHRIVGCLHDHMVQAVLLLLGGRDVPTGVPTMEAPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24991858 | 24998443 | - | CcPI632755_08g013130.1 | Cco08g1313 | 185787 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1313 | 422 | CDD | ZnF_GATA | 273 | 317 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1313 | 422 | Pfam | GATA zinc finger | 274 | 310 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1313 | 422 | ProSiteProfiles | GATA-type zinc finger domain profile. | 268 | 316 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1313 | 422 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 269 | 318 | - | - | |
Cco08g1313 | 422 | MobiDBLite | consensus disorder prediction | 24 | 46 | - | - | |
Cco08g1313 | 422 | ProSitePatterns | GATA-type zinc finger domain. | 274 | 301 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1313 | 422 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 16 | 360 | IPR045280 | GO:0006355(InterPro) | |
Cco08g1313 | 422 | SMART | GATA_3 | 268 | 321 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1313 | 422 | MobiDBLite | consensus disorder prediction | 344 | 422 | - | - | |
Cco08g1313 | 422 | Pfam | CCT motif | 203 | 244 | IPR010402 | GO:0005515(InterPro) | |
Cco08g1313 | 422 | ProSiteProfiles | Tify domain profile. | 69 | 104 | IPR010399 | - | |
Cco08g1313 | 422 | ProSiteProfiles | CCT domain profile. | 203 | 245 | IPR010402 | GO:0005515(InterPro) | |
Cco08g1313 | 422 | Gene3D | - | 266 | 324 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1313 | Cco-Chr8:24991858 | Cco09g0161 | Cco-Chr9:1435788 | 1.70E-45 | dispersed | |
Cco08g1313 | Cco-Chr8:24991858 | Cco08g1314 | Cco-Chr8:25001798 | 8.40E-37 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59801 | PF06203 | CCT | 1.70E-13 | CL0281 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1313 | - | - | - | 0.0 |