Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1314 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGATAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATATGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCTTGCGGACTCTTTTGGGCAAACCGGGTTTCGCTCGGCATTTGGTTTGCAACTTGTAGTCATAAAGATTTACTTTACGAGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCTAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 945 49.1 MYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRVSLGIWFATCSHKDLLYEGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25001798 25011209 - CcPI632755_08g013140.1 Cco08g1314 185788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1314 314 Gene3D - 196 273 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco08g1314 314 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Cco08g1314 314 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Cco08g1314 314 Pfam GATA zinc finger 206 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 MobiDBLite consensus disorder prediction 267 287 - -
Cco08g1314 314 MobiDBLite consensus disorder prediction 171 208 - -
Cco08g1314 314 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cco08g1314 314 CDD ZnF_GATA 205 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 SMART GATA_3 200 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 Pfam tify domain 74 105 IPR010399 -
Cco08g1314 314 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 PANTHER GATA TRANSCRIPTION FACTOR 28 50 307 IPR045280 GO:0006355(InterPro)
Cco08g1314 314 SMART tify_2 71 106 IPR010399 -
Cco08g1314 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1314 Cco-Chr8:25001798 Cco09g1803 Cco-Chr9:30934741 8.10E-61 dispersed
Cco08g1313 Cco-Chr8:24991858 Cco08g1314 Cco-Chr8:25001798 8.40E-37 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59802 PF06203 CCT 8.10E-15 CL0281 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1314 - - - 0.0