Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1314 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGATAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATATGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCTTGCGGACTCTTTTGGGCAAACCGGGTTTCGCTCGGCATTTGGTTTGCAACTTGTAGTCATAAAGATTTACTTTACGAGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCTAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 945 49.1 MYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRVSLGIWFATCSHKDLLYEGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25001798 25011209 - CcPI632755_08g013140.1 Cco08g1314 185788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1314 314 Gene3D - 196 273 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco08g1314 314 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Cco08g1314 314 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Cco08g1314 314 Pfam GATA zinc finger 206 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 MobiDBLite consensus disorder prediction 267 287 - -
Cco08g1314 314 MobiDBLite consensus disorder prediction 171 208 - -
Cco08g1314 314 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cco08g1314 314 CDD ZnF_GATA 205 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 SMART GATA_3 200 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 Pfam tify domain 74 105 IPR010399 -
Cco08g1314 314 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1314 314 PANTHER GATA TRANSCRIPTION FACTOR 28 50 307 IPR045280 GO:0006355(InterPro)
Cco08g1314 314 SMART tify_2 71 106 IPR010399 -
Cco08g1314 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1314 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1314 Cco-Chr8:25001798 Cco09g1803 Cco-Chr9:30934741 8.10E-61 dispersed
Cco08g1313 Cco-Chr8:24991858 Cco08g1314 Cco-Chr8:25001798 8.40E-37 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco06g0656 . 1 180 Tify Gene Family AT4G14713 53.6 1.2e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59802 PF06203 CCT 8.10E-15 CL0281 Cco TF