Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1314 | ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGATAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATATGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCTTGCGGACTCTTTTGGGCAAACCGGGTTTCGCTCGGCATTTGGTTTGCAACTTGTAGTCATAAAGATTTACTTTACGAGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCTAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG | 945 | 49.1 | MYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRVSLGIWFATCSHKDLLYEGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25001798 | 25011209 | - | CcPI632755_08g013140.1 | Cco08g1314 | 185788 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1314 | 314 | Gene3D | - | 196 | 273 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cco08g1314 | 314 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Cco08g1314 | 314 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1314 | 314 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Cco08g1314 | 314 | Pfam | GATA zinc finger | 206 | 239 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1314 | 314 | MobiDBLite | consensus disorder prediction | 267 | 287 | - | - | |
Cco08g1314 | 314 | MobiDBLite | consensus disorder prediction | 171 | 208 | - | - | |
Cco08g1314 | 314 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Cco08g1314 | 314 | CDD | ZnF_GATA | 205 | 270 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1314 | 314 | SMART | GATA_3 | 200 | 271 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1314 | 314 | Pfam | tify domain | 74 | 105 | IPR010399 | - | |
Cco08g1314 | 314 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 236 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1314 | 314 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 50 | 307 | IPR045280 | GO:0006355(InterPro) | |
Cco08g1314 | 314 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Cco08g1314 | 314 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 240 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1314 | Cco-Chr8:25001798 | Cco09g1803 | Cco-Chr9:30934741 | 8.10E-61 | dispersed | |
Cco08g1313 | Cco-Chr8:24991858 | Cco08g1314 | Cco-Chr8:25001798 | 8.40E-37 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59802 | PF06203 | CCT | 8.10E-15 | CL0281 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1314 | - | - | - | 0.0 |