Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1315 ATGAGTGAACCGGAGGAGAGATTTTCCGCCTTAGATCCAGCGTTCGCGGGTAATGGTATTGAGTCTGGAAAATGCAGCAGCAAGATAAGTATGGAAAAGAAAAAGGAAATAATTCATGAGATTGCCCAAAAGTCCAAAGCCGCCACTGAAATCCTTAGGTCTTTTACCCGTAGGGAGCTACTTGAAATCATCTGTGCTGAAATGGGGAAAGAAAGGAAGTACACAGGATATTCGAAATCTCAAATGATAGAGCATCTTTTGAAGTTGGTTTCTCAGAAATCTGAGAGGAGTAGTAGTACTGCTCTTGCCTTTTTACTAGACAAAACTCAAACCAGCCACAAGAGACCCCGAAACACCGACCGATCGTCTGTTGTGCTTTTGAATTCGAATAATAATGCTTCCTTGGAGACTGATGAGGAATTTGCTGGTGTCAAACTTTGTCAGAATGTAGCTTGCAAAGCACCTCTAAATCCAGAGTTTGCTTTTTGCAAAAGATGTTCATGTTGCATCTGCCATTGTTACGATGATAACAAGGATCCAAGTCTTTGGCTGACCTGTGGCTCTGACCTTTCTAATGAGAACGACTCTTGTGGAATGTCATGTCATTTGGAGTGTGCCCTGAAACATGAAAGGTCTGGAATTGTGAAGAATAGTCTCTGTGAAAAATTGGATGGAAGTTTTTACTGCGTTTCGTGTGGAAAGATCAATGGATTAATGGGAAGCTGGAGAAGACAATTGCTAAATGCAAAGGAGGCCAGAAGAGTGGATGTACTATGCCTAAGACTATCCTTGTGTCACAAGATTCTTGTAGGGACAAATCTATACAAAGGAGTGCACGAAACAGTAGAATTGGCTGTGAATATGCTGACAAATGAAGTGGGGCCCCTAGATGAGGTTTGCTTAAGGATGGCTAGGGGTATTGTCAATCGGCTATCCTGTGGTGCGGAGGTCCAGAAACTGTGTGCTTCTGCTGTGGAGGCCTTTGATTCTTTGTGCTGTGTCCCCTACAGAGATTGTATGCAAAAGAGAGAAACATCGAACTGTGAGATCCTATTTAAAGATTCTTCCCCTACCTCTGTGATGATTGTGCTCCAATACGATGATCATCTGTTAAAAGACTTCTTAGGCTGCAGGCTTTGGCATCGTAAAGCCAACGCAGAGGATTATCCGGACCAGCCATCTTTCATTGCATTGAAGCCAGAAAAGAAGTTCAAGATCAATGACCTCTTTCCTTCAACTGAGTACTACTGCAAGGTTTCTTTATTTAGTAGCACACAAGTTTTTGGTGTTTGGGAAGCCAAATGGGTCACGCCCAAATTATCAACGCCATGTCCAGCTTTGTGGAAGCATAGAAATGGAGAAGCTAGGAACGTTGATCTACTTCATTCTCGGGCAGATTCAAAAGACAACCTGACAGATCTTCATCAATTGGACGGGCTCTACAAGAGCAAATGTGAAAGGCTTTACAAAAACCCCTCTCCAAAAACCTCAACCACTTCAATGAAACCAATATCAGTTTGCCCTTCCACGCCTTGTAAAATAAGCGAGACATGCATCCTACTCGGTTTGAATTGCAAAAGAACTGAAGAATCCGACTACGATTATTCCGTTAGAATGGTGAAGTGGCTAGAGCATGAAGGGCACATCAACGAGGACTTTCGAGTGAAGTTCCTGACATGGTTCAGCTTGAAAGCATCAATGAAAGACAGGAGAGTTGTAAGTGCTTTTATCGATGCATTGATTGACGACCCGCCTAGCTTGGCAGGTCAGCTAAGCCACACCTTCATGGATGAGATCTTCTGTAACCAGAAACCAGCTTCTAAGCATGAATACAGCAATTGGATATACCGTTAA 1854 42.99 MSEPEERFSALDPAFAGNGIESGKCSSKISMEKKKEIIHEIAQKSKAATEILRSFTRRELLEIICAEMGKERKYTGYSKSQMIEHLLKLVSQKSERSSSTALAFLLDKTQTSHKRPRNTDRSSVVLLNSNNNASLETDEEFAGVKLCQNVACKAPLNPEFAFCKRCSCCICHCYDDNKDPSLWLTCGSDLSNENDSCGMSCHLECALKHERSGIVKNSLCEKLDGSFYCVSCGKINGLMGSWRRQLLNAKEARRVDVLCLRLSLCHKILVGTNLYKGVHETVELAVNMLTNEVGPLDEVCLRMARGIVNRLSCGAEVQKLCASAVEAFDSLCCVPYRDCMQKRETSNCEILFKDSSPTSVMIVLQYDDHLLKDFLGCRLWHRKANAEDYPDQPSFIALKPEKKFKINDLFPSTEYYCKVSLFSSTQVFGVWEAKWVTPKLSTPCPALWKHRNGEARNVDLLHSRADSKDNLTDLHQLDGLYKSKCERLYKNPSPKTSTTSMKPISVCPSTPCKISETCILLGLNCKRTEESDYDYSVRMVKWLEHEGHINEDFRVKFLTWFSLKASMKDRRVVSAFIDALIDDPPSLAGQLSHTFMDEIFCNQKPASKHEYSNWIYR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25026113 25028943 + CcPI632755_08g013150.1 Cco08g1315 185789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1315 617 CDD PHD_VIN3_plant 167 232 - -
Cco08g1315 617 PANTHER VIN3-LIKE PROTEIN 2-RELATED 26 469 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
Cco08g1315 617 Pfam PHD - plant homeodomain finger protein 147 266 IPR032881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1315 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1539 Cco-Chr6:25895967 Cco08g1315 Cco-Chr8:25026113 7.40E-81 dispersed
Cco08g1315 Cco-Chr8:25026113 Cco11g0279 Cco-Chr11:2775398 2.70E-07 dispersed
Cco08g1315 Cco-Chr8:25026113 Cco11g1245 Cco-Chr11:24705609 1.70E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g524 . . Bda01g00908 . . . . . . Cmo12g00159 . . . Car12g00187 Sed04g0201 . Cpe07g00175 Bhi04g01391 Tan02g2472 Cmetu03g1987 . Hepe10g0437 . Lcy13g1488 Cla08g01157 Cam08g1617 Cec08g1192 Cco08g1315 Clacu08g1316 . Cre08g1101 . . Cone17ag1181 Cone20ag0550 . . . Cme03g01813 . . . . Bpe02g01146 . . . . . . Cma12g00206 Cma05g00537 Car05g00484 . Cpe11g00473 . . . . . . . . . . . . . . . . . Chy03g01316 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008507 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35