Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1322 ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTCTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCCGTAAGTCTTCAGCTCTTACGGAGTGTAAGTCGACCAATGTATCCTATGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCATTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCCGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTGGGAACCGTATTGCTTACCCTTGCTGGTCGGGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATCATTCGAGGTGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTGGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACTCCCATTCGCACTGTTCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCAACCGTCCTCTGCTTCTTATTGAGTCATCTTATAAAGTTAATGGTGACGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCAAAACAAGAGGCAGTCTCAACGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAGATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCACAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCTTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGTCCTCTGCATCACCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 1989 43.24 MVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRLHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPMSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSNRPLLLIESSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSTSGTKAPDTAGSTSDLASNEIKGEKKDVTGMNSKDNMPRGTPPKRSPSASSLSSEKADIPSSSSQNKQDGEKSSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25081921 25087308 + CcPI632755_08g013220.1 Cco08g1322 185796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1322 662 Gene3D - 298 353 IPR023408 -
Cco08g1322 662 Gene3D - 194 296 - -
Cco08g1322 662 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 649 IPR045042 -
Cco08g1322 662 MobiDBLite consensus disorder prediction 518 537 - -
Cco08g1322 662 MobiDBLite consensus disorder prediction 562 594 - -
Cco08g1322 662 MobiDBLite consensus disorder prediction 493 517 - -
Cco08g1322 662 MobiDBLite consensus disorder prediction 618 632 - -
Cco08g1322 662 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cco08g1322 662 MobiDBLite consensus disorder prediction 493 662 - -
Cco08g1322 662 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1322 K22047 - - csv:101213477 1192.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1322 Cco-Chr8:25081921 Cco10g0731 Cco-Chr10:10702350 8.20E-188 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0175 . 134 524 Mechanosensitive Ion Channel Family AT4G00290 67.5 4.4e-154 541.6
Cco08g1322 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.1 6.3e-196 681.0
Cco10g0731 . 127 793 Mechanosensitive Ion Channel Family AT5G10490 56.0 9.5e-192 667.2
Cco08g1322 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 56.7 4.4e-197 684.9
Cco10g0731 . 108 570 Mechanosensitive Ion Channel Family AT1G58200 65.5 2.2e-172 602.8
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 7.4e-261 897.1
Cco02g0422 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cco02g1208 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.5 5.8e-247 850.9
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 8.1e-281 963.4
Cco02g0422 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.4 3.5e-268 921.4
Cco02g1208 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.4e-237 818.9
Cco02g0422 . 266 936 Mechanosensitive Ion Channel Family AT2G17000 58.2 1.2e-220 763.5
Cco02g1208 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.9e-164 575.1
Cco05g1797 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.3 1.2e-184 643.7
Cco05g1797 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.3 5.8e-203 704.5
Cco03g1576 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 53.8 6.7e-199 691.0
Cco05g1792 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.4 2.4e-164 576.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71