Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1322 ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTCTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCCGTAAGTCTTCAGCTCTTACGGAGTGTAAGTCGACCAATGTATCCTATGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCATTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCCGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTGGGAACCGTATTGCTTACCCTTGCTGGTCGGGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATCATTCGAGGTGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTGGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACTCCCATTCGCACTGTTCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCAACCGTCCTCTGCTTCTTATTGAGTCATCTTATAAAGTTAATGGTGACGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCAAAACAAGAGGCAGTCTCAACGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAGATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCACAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCTTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGTCCTCTGCATCACCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 1989 43.24 MVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRLHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPMSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSNRPLLLIESSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSTSGTKAPDTAGSTSDLASNEIKGEKKDVTGMNSKDNMPRGTPPKRSPSASSLSSEKADIPSSSSQNKQDGEKSSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25081921 25087308 + CcPI632755_08g013220.1 Cco08g1322 185796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1322 662 Gene3D - 298 353 IPR023408 -
Cco08g1322 662 Gene3D - 194 296 - -
Cco08g1322 662 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 649 IPR045042 -
Cco08g1322 662 MobiDBLite consensus disorder prediction 518 537 - -
Cco08g1322 662 MobiDBLite consensus disorder prediction 562 594 - -
Cco08g1322 662 MobiDBLite consensus disorder prediction 493 517 - -
Cco08g1322 662 MobiDBLite consensus disorder prediction 618 632 - -
Cco08g1322 662 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cco08g1322 662 MobiDBLite consensus disorder prediction 493 662 - -
Cco08g1322 662 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1322 Cco-Chr8:25081921 Cco10g0731 Cco-Chr10:10702350 8.20E-188 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1322 K22047 - csv:101213477 1192.56