Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1324 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCCCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAACTTGCACTCTAGTAACCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGCTTGAAAATGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTGCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGCCATGCAACAAGCAAAGGCGTGAGGGAGCATCCAGCTGCGCATTGGTTCCATTTTGAGCAACCCAAGTGGGCCAAAAGCTTTGACACAAATCTGTGTTTGGTAAAACTCTGGCTTCCCCTCCCTGTTCATCGGAGCTTGGGCTGCGCTCTGATTTACGAATGTCAACACACTGAGTTCCTTTTGACTCGTTTTCAACTCACCGATCTTCCCTTCATCCCTCTCTTCGCCATGAAGAACGCCCCCGTCAAAGGCCTTGAAGTTTTCGATTTCACCGAAGAAGACGAACTTCCTGAATTGATCTCCGAGAAGCGCCTCAGCAAATTTAAAAACCCTAATCTCGAATCTAACGCTGTTTTGAAGTATGAATTTCTCGAATGTGGGAAGGAGATTGAAAATCCACACATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATAATCCTTCGGGCACAATTAAAGAGCAACAAATCATGGAAGAAGAGAAATATCAATTGGATGCCAATGCAAAATCAGAAGTGAAATGCCATTTGCAAGATATGCTCGTGCAAGTAGATAATCATGTGACACAAAGCCTTTGCTCTCAACTTGGGAAAATTGGATCTAGCTCTCAAAGTCCTACCCAGGGGTTAACTTGCACTCTTCCTGAGTTTACTGCTGAAAGGGAGCAAGTTGATGCACTTTCAGATCCTAATGGAAGCATAAAAGAGAGTTCTCCAGTGAGCCCTCCTTCAGAAACTGTAGAGGATGGTGTTTTGTTGAACGGGAAGTCTTCAGATAATTGCTCATCTGACAATGAAAAGGATGATCTTAGCGACGAGGTTGTCCTTTATCCCGATTATATTGTATGTGGAGACTTTTACTGTGCCAGTCCCTCGTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTGCTGATTATGGAAGCAATGAGTACCTTAACCTTGAATGGAGAGTCGACGATGTCATTCATATTGAGTGCCAGTGCTTTCAAAGGGTTGAATATGTGATGATCAAGCTCCATGTTATCTCAAAGGATGCTGGTGAATTTGACAATGCGTGTGACAGTTCTGGCATTAAGGAAGTGAAGGTTGTTCTTGTTGATTCTTACTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGATGTGGGAATAGGATCCGATGATGATGATTTAGGTGGGCAGAGACACTATTTTCCCAACTTTGATGAGCCTTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCTGTTTCCATTAGTAAGAGGGATGTTGACTTGCTGCAACCAGAGACGTTTGTCAATGACACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGATCCCAAGGAGAAGCATAGATTTCACTTCTTCAATAGTTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCAGATGGCAGAGCTGCCTTTCTACGTGTTCGGAAATGGACACGGAAAGTGGATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAATCTTCATTGGAGCTTAATGGTCATATGCCATCCTGGCGAAGTGGCTAGATATAGTGATGAAGACCTGACGAAGTCAATGAAAGTACCGTGTATATTGCATATGGATTCTATTAAAGGAAGTCATGCAGGTCTTAAGAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAAAGAGAGAAACAAGGAGACACCTGAAGATATTTCAACAAAATTTAAGAACCTTCGGTTCCTCCCACTTGAGCTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTGTTCTTGCTCCACTATCTAGAACTTTTTCTGGCAGAAGCTCCTCTTGATTTTAGCCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCCTACCTCAAGCGAACTTTAATACAGAGATTAATTTTTGAAATCCTTGAGAACCGATCTCGAGAAATGTCCGCAGCTGCTTGCAGTGATGAACTCTTGTCTAAATTTCCATCCAATAATGAGGATGAAACTGGTCTGGAGCTTCTTCCCGAAAGAGGAAGCCCAGCCGTGGCACGCAATCACAATTTGCCAACCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTATCTGAATCTTCCAGTAGACACAACCACTTCATTGACGGTTCTGGCTTGGTCGTCAGAGAATTATTTGAACCAGGCGCCTCTAATGGACCGTTACTTGGACACTATCAATCTTTTGGTCAAACATCATCGTATTTTGATTCAAATGGTACTGTGCTGGAGGAGGACGCAGATGCAGAAACTGGAGACCGTTTCATGTACTTACCTCCACAACAGGATGGTTTGCAGCCAATTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGTGTTCATCGAGAGGCCTTGAATCGGACCCTGCTTTTGACTTATGCATGTCTATTCAACAAGAGCCCGGTGGGGGCATTGCCTCGTCCCCGACAGATGACTTGGAAGACGTGGGAATCATTGAACATTCCAATGTTAGGGAAGCAAGTCCTGGTAACACAGAAGAAAGGAACGGAAAAGGGCCTCTACCGATCGAGAAGGAGAACCTGGAACCTGTAGCAGAATGCCCTACTTCTGCTGCTACCACGAAGAACGATTTTGATGCCATTGGCTTCTCTCAAGATGACACTAACGAGGAAAATAATGGTTCTGATAATCCCATGTGTAAAGAGACTCTCGTTGCATTGCCGCATCTAGATAAAGATATAACAACCAAAACAGACGTCGAACATGATGATGTTCTGGTGGTTGCTTCGGTTACTGAGGTGGACTTAGACGAGCAACCCCCTGCCAAGAAACCAAGGCGTTTGTTATACCACGAAGAAGCGAGTAACAACGGTGTCAGAGAAGGTTTGTTGGATGATGCAGAGTTATAA 3687 43.67 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLHSSNLGKLEYPSLELQLENENSNHVRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGHATSKGVREHPAAHWFHFEQPKWAKSFDTNLCLVKLWLPLPVHRSLGCALIYECQHTEFLLTRFQLTDLPFIPLFAMKNAPVKGLEVFDFTEEDELPELISEKRLSKFKNPNLESNAVLKYEFLECGKEIENPHMDVDLDECNRGCDNGISHNPSGTIKEQQIMEEEKYQLDANAKSEVKCHLQDMLVQVDNHVTQSLCSQLGKIGSSSQSPTQGLTCTLPEFTAEREQVDALSDPNGSIKESSPVSPPSETVEDGVLLNGKSSDNCSSDNEKDDLSDEVVLYPDYIVCGDFYCASPSLTFSHNGIKINGFADYGSNEYLNLEWRVDDVIHIECQCFQRVEYVMIKLHVISKDAGEFDNACDSSGIKEVKVVLVDSYWSEKQQKIRSLDSRYMAIWNMSLDVGIGSDDDDLGGQRHYFPNFDEPFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGRAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDEDLTKSMKVPCILHMDSIKGSHAGLKNLIQSYLLEEWKERNKETPEDISTKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILENRSREMSAAACSDELLSKFPSNNEDETGLELLPERGSPAVARNHNLPTSQAVDGIEITLLSESSSRHNHFIDGSGLVVRELFEPGASNGPLLGHYQSFGQTSSYFDSNGTVLEEDADAETGDRFMYLPPQQDGLQPIDAMTSQACRFPCSSRGLESDPAFDLCMSIQQEPGGGIASSPTDDLEDVGIIEHSNVREASPGNTEERNGKGPLPIEKENLEPVAECPTSAATTKNDFDAIGFSQDDTNEENNGSDNPMCKETLVALPHLDKDITTKTDVEHDDVLVVASVTEVDLDEQPPAKKPRRLLYHEEASNNGVREGLLDDAEL 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25095851 25114849 - CcPI632755_08g013240.1 Cco08g1324 185798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1324 1228 MobiDBLite consensus disorder prediction 201 228 - -
Cco08g1324 1228 Gene3D - 655 899 - -
Cco08g1324 1228 MobiDBLite consensus disorder prediction 461 475 - -
Cco08g1324 1228 Pfam Ulp1 protease family, C-terminal catalytic domain 678 879 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1324 1228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 MobiDBLite consensus disorder prediction 1196 1213 - -
Cco08g1324 1228 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1324 1228 MobiDBLite consensus disorder prediction 201 216 - -
Cco08g1324 1228 MobiDBLite consensus disorder prediction 1196 1228 - -
Cco08g1324 1228 FunFam Probable ubiquitin-like-specific protease 2B 703 834 - -
Cco08g1324 1228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 ProSiteProfiles Ubiquitin-like protease family profile. 663 857 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1324 1228 MobiDBLite consensus disorder prediction 459 499 - -
Cco08g1324 1228 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 302 1158 - -
Cco08g1324 1228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco08g1324 1228 Coils Coil 81 115 - -
Cco08g1324 1228 Pfam K-box region 88 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1324 1228 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 Gene3D - 703 834 - -
Cco08g1324 1228 FunFam Transcription factor, MADS-box 13 83 - -
Cco08g1324 1228 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1324 1228 Coils Coil 151 178 - -
Cco08g1324 1228 SUPERFAMILY Cysteine proteinases 655 900 IPR038765 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1324 Cco-Chr8:25095851 Cco10g0939 Cco-Chr10:20524499 2.60E-46 dispersed
Cco11g1527 Cco-Chr11:28128783 Cco08g1324 Cco-Chr8:25095851 3.00E-06 dispersed
Cco04g1210 Cco-Chr4:27514000 Cco08g1324 Cco-Chr8:25095851 1.20E-14 transposed
Cco05g2798 Cco-Chr5:35726583 Cco08g1324 Cco-Chr8:25095851 6.10E-35 transposed
Cco06g0517 Cco-Chr6:5641371 Cco08g1324 Cco-Chr8:25095851 7.20E-19 transposed
Cco09g1796 Cco-Chr9:30791900 Cco08g1324 Cco-Chr8:25095851 2.60E-127 transposed
Cco11g1526 Cco-Chr11:28118774 Cco08g1324 Cco-Chr8:25095851 2.70E-16 wgd
Cco04g1582 Cco-Chr4:31196782 Cco08g1324 Cco-Chr8:25095851 4.70E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59804 PF02902 Peptidase_C48 1.00E-39 CL0125 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1324 K08596 - csv:101206097 1546.95