Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1328 ATGAAAGGCGATTTTGCTCATCCCAAGAGCAAAACCTCCAATATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCACCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCAAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAAACCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGAGGTGGAGATAGTAGCGGGCACGGGCAGGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGTACTAA 873 56.36 MKGDFAHPKSKTSNMLSKFHLSAHPFSHHPPPQQPADEPTTAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25156404 25157276 + CcPI632755_08g013280.1 Cco08g1328 185802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1328 290 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Cco08g1328 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 208 IPR005175 -
Cco08g1328 290 MobiDBLite consensus disorder prediction 1 86 - -
Cco08g1328 290 MobiDBLite consensus disorder prediction 222 258 - -
Cco08g1328 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
Cco08g1328 290 MobiDBLite consensus disorder prediction 244 258 - -
Cco08g1328 290 Gene3D - 93 225 - -
Cco08g1328 290 FunFam AT-hook motif nuclear-localized protein 94 226 - -
Cco08g1328 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 259 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco08g1328 290 PIRSF ESCAROLA 9 289 IPR014476 GO:0003680(InterPro)
Cco08g1328 290 CDD DUF296 94 207 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1293 Cco-Chr3:25825771 Cco08g1328 Cco-Chr8:25156404 2.00E-36 dispersed
Cco08g1328 Cco-Chr8:25156404 Cco09g1233 Cco-Chr9:12556308 1.70E-44 dispersed
Cco11g1503 Cco-Chr11:27851611 Cco08g1328 Cco-Chr8:25156404 3.80E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1328 - - - 0.0