Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1331 ATGGCCCTCAAATTTTTTTTCTTCTTCTTTTTAGCCCTTCTGGTACTGAATTCCAATGCTTCCGATCTCTGTGCCTCCGGATCGGACGGCGATCTCTCCGTCATACCCATCTATGGCAAATGCTCGCCATTCACGGCGCCAAAGTCAGAATCTTGGGTGAACACGGTGATAGACATGGCTTCAAAGGACCCAGCCAGAATTAAGTACTTGTCGAGCCTTGCTGCCCAGAAGACGGTGGCGGCTCCAATCGCCTCCGGGCAGCAGATTCTTAACATTGGGAATTATGTTGTGAGAGTTCAACTAGGTACTCCGGGTCAAGTAATGTATATGGTTCTTGACACCAGCAACGACGCCGCCTGGGCGCCGTGCTCCGGCTGCATCGGTTGTTCCGCCACCACTTTTTGGTCTAAGAATTCCTCAACTTTTGCGACGTTAGATTGCTCTAAACCACAATGTAGTCAGGCTCGGGGTCTTTCCTGTCCGACCACCGGCAACGCCGATTGCCTATTCAATCAAACATACGGCGGCGACTCATCGTTTTCAGCCACTTTGGTTCAAGACTCTCTCCATTTGGGCGCTGACGTCATTCCAAATTTCTCATTTGGTTGCATCAGCTCCGCCTCCGGCAGCTCCATTCCGCCGCAAGGCCTGATGGGTCTAGGCCGTGGTCCCCTCTCACTCATCTCCCAATCCGGTTCACTCTACTCCGGTCTATTCTCCTACTGCCTCCCGAGTTTCAAATCCTACTACTTCTCAGGTTCACTAAAACTTGGACCGGCCGGTCAACCAAAGTTAATACGAACCACCCCACTCCTTCGCAACCCGCACCGGCCCTCGCTCTACTACGTGAACCTAACCGGCATCAGCGTTGGTCGGGTCCTCATCCCGATTTCCCCCGAGCATCTCGCATTTGACCCGAACACGGGAGCGGGAACCATCATCGACTCGGGCACGGTAATAACCCGGTTCGTGTACCCGGTTTACACGGCGGTTCGAGATGAGTTTAGAAAGCAAGTGGGTGGTTCGTTTTCGCCTTTGGGGGCTTTTGACACGTGTTTTGCAACGAGCAATGAGGTTTCGGCACCTAGCATTACGTTCCATTTGAGTGGATTGGATTTGAAATTGCCAATGGAAAATAGTTTGATTCATAGCAGCGCGGGTTCGTTGGCTTGTTTGGCGATGGCGGCGGCTCCAAATAATGTGAATTCTGTGTTGAATGTGATAGCCAATTTGCAGCAGCAAAATCATCGGATTTTGTTTGATATTACTAATTCTAAATTGGGGATTGCTCGTGAGCTTTGTAATTAG 1308 50.84 MALKFFFFFFLALLVLNSNASDLCASGSDGDLSVIPIYGKCSPFTAPKSESWVNTVIDMASKDPARIKYLSSLAAQKTVAAPIASGQQILNIGNYVVRVQLGTPGQVMYMVLDTSNDAAWAPCSGCIGCSATTFWSKNSSTFATLDCSKPQCSQARGLSCPTTGNADCLFNQTYGGDSSFSATLVQDSLHLGADVIPNFSFGCISSASGSSIPPQGLMGLGRGPLSLISQSGSLYSGLFSYCLPSFKSYYFSGSLKLGPAGQPKLIRTTPLLRNPHRPSLYYVNLTGISVGRVLIPISPEHLAFDPNTGAGTIIDSGTVITRFVYPVYTAVRDEFRKQVGGSFSPLGAFDTCFATSNEVSAPSITFHLSGLDLKLPMENSLIHSSAGSLACLAMAAAPNNVNSVLNVIANLQQQNHRILFDITNSKLGIARELCN 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25196713 25198769 + CcPI632755_08g013310.1 Cco08g1331 185805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1331 435 PANTHER ASPARTYL PROTEASES 28 434 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco08g1331 435 ProSiteProfiles Peptidase family A1 domain profile. 95 430 IPR033121 -
Cco08g1331 435 Pfam Xylanase inhibitor C-terminal 281 430 IPR032799 -
Cco08g1331 435 Pfam Xylanase inhibitor N-terminal 95 258 IPR032861 -
Cco08g1331 435 SUPERFAMILY Acid proteases 91 434 IPR021109 -
Cco08g1331 435 FunFam aspartyl protease AED3 73 258 - -
Cco08g1331 435 Gene3D Acid Proteases 260 435 IPR021109 -
Cco08g1331 435 Gene3D Acid Proteases 70 258 IPR021109 -
Cco08g1331 435 FunFam Aspartyl protease AED3 259 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2952 Cco-Chr5:37025582 Cco08g1331 Cco-Chr8:25196713 1.70E-133 dispersed
Cco07g1206 Cco-Chr7:25914423 Cco08g1331 Cco-Chr8:25196713 6.70E-26 dispersed
Cco08g1331 Cco-Chr8:25196713 Cco09g0333 Cco-Chr9:2947253 3.30E-44 dispersed
Cco08g1331 Cco-Chr8:25196713 Cco08g0719 Cco-Chr8:18769855 2.00E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g279 . . . . . . . . . . . . . . . . . Bhi04g01921 . . . Hepe02g2278 . Lcy10g1220 Cla08g01171 Cam08g1635 Cec08g1208 Cco08g1331 Clacu08g1331 . Cre08g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01032 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012953 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27