Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1342 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTCCATAATGGACGGCTGAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATTTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGAACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCACGACGATATGAGCCCTTTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCGTATTTCTCAGTCATAATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGAAAATCAAGGATCACCAAGAACAAGAGTAAAAAACGTTGA 1341 42.58 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIEQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGHDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25286084 25291689 - CcPI632755_08g013420.1 Cco08g1342 185816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1342 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Cco08g1342 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1342 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Cco08g1342 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Cco08g1342 446 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Cco08g1342 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco08g1342 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Cco08g1342 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Cco08g1342 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Cco08g1342 446 CDD CIPK_C 309 424 - -
Cco08g1342 446 SUPERFAMILY Protein kinase-like (PK-like) 6 286 IPR011009 -
Cco08g1342 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1342 446 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1342 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1342 446 FunFam Non-specific serine/threonine protein kinase 2 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0793 Cco-Chr3:8354474 Cco08g1342 Cco-Chr8:25286084 2.20E-149 dispersed
Cco05g1869 Cco-Chr5:27617417 Cco08g1342 Cco-Chr8:25286084 2.60E-105 dispersed
Cco08g1342 Cco-Chr8:25286084 Cco10g1280 Cco-Chr10:25700627 9.00E-98 dispersed
Cco10g2133 Cco-Chr10:34559669 Cco08g1342 Cco-Chr8:25286084 1.00E-37 dispersed
Cco11g0252 Cco-Chr11:2448783 Cco08g1342 Cco-Chr8:25286084 3.10E-13 dispersed
Cco06g1297 Cco-Chr6:23194179 Cco08g1342 Cco-Chr8:25286084 3.30E-169 transposed
Cco04g1621 Cco-Chr4:31553922 Cco08g1342 Cco-Chr8:25286084 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87044 PF00069 Pkinase 2.60E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1342 - - - 0.0