Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1346 ATGGGTACTGGTTGGAGAAAAGCGTTCTGCACTACAATTTCTCGAGATTCAGACTCTAATAATATCTCTGAGAAACAGAGGACTTCTGGTACTCCAAATCCCAGCCCTAGAAGCTGTGTTCGATTGGGTTTCTTCAGCAACCCTTCTACTCCACGGTTGCAGTCTCATCAGCCACTGAGTAGTCCAGGTCTTCGCTGCCGTACAGCTCAAGATGCCACTGTAAATCAGAGTCCGACTCTCCATTGCAAGACCTCTTCTTCCTCTTCCTCTACTCCTAAATCTGCGAAATCCCAACGAGGGGTTTTGGGTTCGAATCCTTCCTCTCCTCGCTCCCCTTTGAAACTCTCTCTTTTCAAGAACAGCTTTAAGTTCAGAAGTAGCTGTGGAATCTGTTTGAATAGCGTGAAAACAGGGCATGGGACGGCGATTTACACGGCGGAGTGTTCCCATGCTTTTCATTTTCCTTGTATAGCCGCTCATGTCAGAAACCACGCCACTCTGGTTTGCCCTGTCTGTAACACCACATGGAAAGACGTTCCTCTGCTCGCTGCCCATAAGAATTTGGGCCCAAACCAACACGATTCCAAACCCAAGATTGAAGATAAAACCATGATTGAATCTTCCCCCAGAGCCTTTAAATCTAAACAAGACCCAAAAGAAAAGCCCTCGGAATTCAGGTCCTACGATGACGATGAACCCCTGTTATCCCCTACCTCCGGCGGCCGGATTATTCCCATCCCCGAGGCTGATGAGAACCAAGACGATGTCGAGGAATTTCAAGGCTTCTTTGTAGACCCAAAACCGCCTTCCACTTCGGTTAAATCTTCAATTCAGAGAACCAACGTGCAGGTCCGACTCCTCCCTGAAACGGCGTTGATTTCATCTGGACACACCCACGAGACCTACGCGGTGGCTCTGAAAGTAAAAGCCCCACCGCCGCTTCCGGCTAGAAACAGAGCCAATGCCAATTTATTAGACCCATCCCGCCGTGCGCCGATTGATTTAGTGACGGTGCTGGATGTGAGTGGAAGCATGACGGGGCCGAAATTAATGATGCTGAAACGCGCCATGCGATTGGTCATTTCGTCGTTGGGCTCGTCGGACCGGCTCGCCATCGTCGCGTTCTCGGCCACTCCTAAAAGGGTGTTGCCGTTGAGGAGAATGACGGCTCAAGGCCAACGCGCTGCCCGGCACGTGATTGACACGTTGGTTTGCGGCCAAGGAACTAGCGTGGGGGAGGCTTTGAGAAAAGCCACAAAAGTACTCGAGGACCGGCGAGAGAGAAACCCGGTCGCTAGTATCATGCTTTTATCCGACGGTCAAGATGAGCGGATCCATTCAAATCAACGGCAGATGACGCGACACGAGTCGTCCACACGGTTTGCCCATATAGAAATCCCGGTTCATGCGTTTGGGTTCGGGAAGAGCGGTGGATACTGTCAAGAACCGGCGGAGGACGCTTTTGCAAAATGCGTGAGTGGGTTATTAAGCGTGGTGGTTCAAGACCTCCGTATTCAACTCGGGTTCCCGACCGGTTCATCTCCGGTTGTAATCTCGGCCATATATTCATGTACAAGCCGGCCCACTGTTTGCAGCTTGGGTTCGGTCCGGCTTGGCGATTTATACGCCGAGGAGGAAAGGGAATTACTCGTGGAATTGAAGATTCCAACCTCGGCTGCTGGGACCCACCACGTGATGACGATGCAATGCCTTTACAAAGACCCATCCACACAAGAAGTAGTGTACAGCCGAGAACAAGACATCCTCATGGCACCACCGGTAGCCGTTGGATCATCCGCTCCGAAGATCGAACGGCTGAGAAACATGTTCATAACAACTCGCGCTGTGGCGGAATCCAGGAGATTAATTGAGTACGACGATCATACAAGCGCGCATCATTTACTCGCGTCGGCGCGTGCATTACTAATCCAATCCGGATCAGCTAGTGCTGACGTGTACGTGCGTGAGCTGGAAGTTGAGCTGGCAGAACTCCATTGGCGAAGGCAACAACAATTCGAATTACATCAGCAGCAGCAGCAGCAACAACATTTAGTCACAAAGGCCCCACGTAGGCGAGGCGGCGGCGGTGGCGATAAGGAAAGTCCGGCCATGGTGGACGAAAACGGAGAGCCGTTGACACCGACATCGGCGTGGAGGGCGGCGGAGAAGCTTGCCAGAGTGGCGATTATGAAAAAGTCGTTGACGAGTAGAGTGGGAGATTTACACGGGTTTGAAAACGCCAGGTTCTAG 2250 51.78 MGTGWRKAFCTTISRDSDSNNISEKQRTSGTPNPSPRSCVRLGFFSNPSTPRLQSHQPLSSPGLRCRTAQDATVNQSPTLHCKTSSSSSSTPKSAKSQRGVLGSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGHGTAIYTAECSHAFHFPCIAAHVRNHATLVCPVCNTTWKDVPLLAAHKNLGPNQHDSKPKIEDKTMIESSPRAFKSKQDPKEKPSEFRSYDDDEPLLSPTSGGRIIPIPEADENQDDVEEFQGFFVDPKPPSTSVKSSIQRTNVQVRLLPETALISSGHTHETYAVALKVKAPPPLPARNRANANLLDPSRRAPIDLVTVLDVSGSMTGPKLMMLKRAMRLVISSLGSSDRLAIVAFSATPKRVLPLRRMTAQGQRAARHVIDTLVCGQGTSVGEALRKATKVLEDRRERNPVASIMLLSDGQDERIHSNQRQMTRHESSTRFAHIEIPVHAFGFGKSGGYCQEPAEDAFAKCVSGLLSVVVQDLRIQLGFPTGSSPVVISAIYSCTSRPTVCSLGSVRLGDLYAEEERELLVELKIPTSAAGTHHVMTMQCLYKDPSTQEVVYSREQDILMAPPVAVGSSAPKIERLRNMFITTRAVAESRRLIEYDDHTSAHHLLASARALLIQSGSASADVYVRELEVELAELHWRRQQQFELHQQQQQQQHLVTKAPRRRGGGGGDKESPAMVDENGEPLTPTSAWRAAEKLARVAIMKKSLTSRVGDLHGFENARF 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25375982 25378324 + CcPI632755_08g013460.1 Cco08g1346 185820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1346 749 CDD vWA_C3HC4_type 333 500 - -
Cco08g1346 749 MobiDBLite consensus disorder prediction 187 247 - -
Cco08g1346 749 MobiDBLite consensus disorder prediction 15 110 - -
Cco08g1346 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 229 IPR013083 -
Cco08g1346 749 MobiDBLite consensus disorder prediction 191 231 - -
Cco08g1346 749 SUPERFAMILY RING/U-box 127 178 - -
Cco08g1346 749 SMART ring_2 128 172 IPR001841 -
Cco08g1346 749 SMART VWA_4 332 511 IPR002035 -
Cco08g1346 749 ProSiteProfiles VWFA domain profile. 334 474 IPR002035 -
Cco08g1346 749 Gene3D von Willebrand factor, type A domain 334 494 IPR036465 -
Cco08g1346 749 Pfam Ring finger domain 127 173 IPR001841 -
Cco08g1346 749 SUPERFAMILY vWA-like 332 487 IPR036465 -
Cco08g1346 749 ProSiteProfiles Zinc finger RING-type profile. 128 173 IPR001841 -
Cco08g1346 749 Pfam von Willebrand factor type A domain 335 441 IPR002035 -
Cco08g1346 749 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 121 747 IPR051266 -
Cco08g1346 749 MobiDBLite consensus disorder prediction 675 715 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1346 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1496 Cco-Chr1:26775360 Cco08g1346 Cco-Chr8:25375982 8.10E-72 transposed
Cco02g2277 Cco-Chr2:35339496 Cco08g1346 Cco-Chr8:25375982 1.90E-76 transposed
Cco04g1887 Cco-Chr4:33448274 Cco08g1346 Cco-Chr8:25375982 1.40E-36 transposed
Cco08g0898 Cco-Chr8:20858468 Cco08g1346 Cco-Chr8:25375982 8.10E-72 transposed
Cco04g1572 Cco-Chr4:31097565 Cco08g1346 Cco-Chr8:25375982 6.40E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66