Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1350 ATGGTGATGCCGGAGTCGTCTGAGGGCCACCGGACGGCATCTCGTCGAGCGAATCGACCGCCGACTCGACCGCTTGTCGGACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAACCACTTGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGTTGGAGCGCTTTCCATAGTACTCGCCGTTTTGATTATTGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGCGGTTGGTTTTTGGATTCTCGACGTTGCTAACAACGTCTCCCAGGGTCCGTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTCCCGTTTACTCGTACGTCTGCATGTTCTGTTAATTGTGCAAATCTGAAGTCAGCTTTCTTGATTGATATTGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTCTAGTTTCAAGCGACAGGTCCTCCCTGGTTTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTTCGGAGCATTTCTCTGGGACTTGTTACGGACTTGTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTCCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATCTATGGTGGCAAGCCAAATGAAGGACAGGCTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTCTATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACTATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTTGCTCAGAACCCCAGAAACCTCACATGAGAATATTTGAAAAGCTTGGTTGGTGTGCATCTCATCCATGA 1503 46.77 MVMPESSEGHRTASRRANRPPTRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVVGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFAVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKIFPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLVSSDRSSLVLEEGMGQSSHAFGAFLWDLLRTCRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQAYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGLCFLTILVVTYVANYMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFACSEPQKPHMRIFEKLGWCASHP 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25417159 25422281 - CcPI632755_08g013500.1 Cco08g1350 185824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1350 500 Pfam MFS/sugar transport protein 47 181 - -
Cco08g1350 500 PANTHER SUGAR TRANSPORTER 28 465 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cco08g1350 500 CDD MFS_SLC45_SUC 35 478 - -
Cco08g1350 500 NCBIfam sucrose/proton symporter 30 479 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cco08g1350 500 Gene3D MFS general substrate transporter like domains 32 480 IPR036259 -
Cco08g1350 500 SUPERFAMILY MFS general substrate transporter 33 470 IPR036259 -
Cco08g1350 500 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1350 Cco-Chr8:25417159 Cco11g0996 Cco-Chr11:17184521 8.20E-124 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1350 K15378 - csv:101220384 883.634