Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1350 ATGGTGATGCCGGAGTCGTCTGAGGGCCACCGGACGGCATCTCGTCGAGCGAATCGACCGCCGACTCGACCGCTTGTCGGACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAACCACTTGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGTTGGAGCGCTTTCCATAGTACTCGCCGTTTTGATTATTGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGCGGTTGGTTTTTGGATTCTCGACGTTGCTAACAACGTCTCCCAGGGTCCGTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTCCCGTTTACTCGTACGTCTGCATGTTCTGTTAATTGTGCAAATCTGAAGTCAGCTTTCTTGATTGATATTGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTCTAGTTTCAAGCGACAGGTCCTCCCTGGTTTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTTCGGAGCATTTCTCTGGGACTTGTTACGGACTTGTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTCCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATCTATGGTGGCAAGCCAAATGAAGGACAGGCTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTCTATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACTATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTTGCTCAGAACCCCAGAAACCTCACATGAGAATATTTGAAAAGCTTGGTTGGTGTGCATCTCATCCATGA 1503 46.77 MVMPESSEGHRTASRRANRPPTRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVVGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFAVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKIFPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLVSSDRSSLVLEEGMGQSSHAFGAFLWDLLRTCRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQAYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGLCFLTILVVTYVANYMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFACSEPQKPHMRIFEKLGWCASHP 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25417159 25422281 - CcPI632755_08g013500.1 Cco08g1350 185824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1350 500 Pfam MFS/sugar transport protein 47 181 - -
Cco08g1350 500 PANTHER SUGAR TRANSPORTER 28 465 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cco08g1350 500 CDD MFS_SLC45_SUC 35 478 - -
Cco08g1350 500 NCBIfam sucrose/proton symporter 30 479 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cco08g1350 500 Gene3D MFS general substrate transporter like domains 32 480 IPR036259 -
Cco08g1350 500 SUPERFAMILY MFS general substrate transporter 33 470 IPR036259 -
Cco08g1350 500 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1350 K15378 - - csv:101220384 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1350 Cco-Chr8:25417159 Cco11g0996 Cco-Chr11:17184521 8.20E-124 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g0996 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco11g1003 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco08g1350 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 2.4e-131 466.1
Cco11g0996 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco11g1003 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco08g1350 . 25 477 Sucrose Transporter Gene Family AT2G14670 52.7 9.9e-130 460.7
Cco11g0996 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco11g1003 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco08g1350 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.2 3.6e-110 395.6
Cco09g2395 . 152 598 Sucrose Transporter Gene Family AT2G02860 70.1 1.0e-181 633.3
Cco11g0996 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco11g1003 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G06170 51.1 8.1e-124 441.0
Cco11g0996 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco11g1003 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G43610 52.1 6.0e-127 451.4
Cco08g1350 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 2.0e-194 675.6
Cco11g0996 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g1003 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g0996 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco11g1003 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.8 8.1e-127 451.1
Cco11g0996 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g1003 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g0996 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco11g1003 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.8 8.1e-127 451.1
Cco11g0996 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco11g1003 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco08g1350 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 2.4e-131 466.1
Cco09g2395 . 152 598 Sucrose Transporter Gene Family AT2G02860 70.1 1.0e-181 633.3
Cco08g1350 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 2.0e-194 675.6
Cco11g0996 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g1003 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g0996 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g1003 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g0996 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco11g1003 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G43610 52.1 6.0e-127 451.4
Cco11g0996 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco11g1003 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco08g1350 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.2 3.6e-110 395.6
Cco11g0996 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco11g1003 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco08g1350 . 25 477 Sucrose Transporter Gene Family AT2G14670 52.7 9.9e-130 460.7
Cco11g0996 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco11g1003 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G06170 51.1 8.1e-124 441.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30