Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1352 ATGGCTTTCCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCTTCTCTTCTTCTCAAGCTCTTACTACTTCTGCTACTAACAACCAATCTCAGTTCTTTTATCTCATGCAAAAGACTGCCTCAGGAGAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCCTTCTGCAGCTTCACTGGAATCCAGTGCAATGACCGAGGTCACGTTGTCGAGATTGATATCACTGGCCAGTCACTCTCTGGTAGCTTTCCGGAAGATGTATGTTCTTACTTGCCAGAGCTGAGAGTTCTTCGCCTTGCTGGTACCAGTTTCTACGGACGTTTTCCTTCAGGAATCACCAACTGCTCTCTCATTGAAGAACTTAACATGAGCTCTTTGTATCTCAATGGAACTATCCCAGATTTATCGCAAATGAAACAACTGCGTGTACTCGACCTCTCGTACAATTTCTTTACCGGTGATTTTCCCATGTCGGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCCTGACGAAGCTGAAATCTATGGTGTTGACAACCTGTATGTTAGATGGTGAAATCCCCCGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAGAGAAATCTCCTTGCTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGCTTGGAAATTTAACAGAGCTTGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTTCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGACATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTGCAAAATAGGCTTTCTGGAGAAATACCAGGAAGTTTTGCTGAATGCATATCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGATAGGAACAATTCCTGAAGGAGTTTTGGGTCTCCCCCATGTTTCAATTATTGATGTTGCTTATAATAATCTCACTGGTTCCATTTCAAATTCTATCTCACAGGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTCAGCAACAATCTTCTCTCGGGTCCAGTGCCATCGCAGATTGGCAATCTGATGAAACTAAATCAGGTGATGTTACAAGGAAACCAATTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAATCTCTCGACGTTCTTGATCTCTCGAACAACCGTTTATCTGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTATCGGGTCCAATTCCTTTGTCTTTGATCAAACAAGGATTAGCAGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCTGATCAGAAATTCCCCATTTGTTCACATTTCTCCTTTAAAAAACGTCTAAATTTCATCTGGGGAATCGTCATTCCATTGCTCATCTTCTTCACCGGCGCCGTCCTGTTTCTAAAACGACGAATCACAACAAGAAAAACATCAGAGATCGAAAACGAACAAACCCTCTCCTCTTCATTCTTCCATTTGCAGAGCTTCGATCAAAGCAGGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGACATGGTGGATCAGGAACAGTCTACAAAATTGAGCTCGGAAATGGAGAAATTGTTGCCGTGAAGAGGCTATGGAATCGAAGAGCGAAACATCTCTTCGACAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATAAGACACAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAATTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAATTTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCACAAGGTCTCGCTTATCTCCACCACGATCTCTCGCCGCCGGTAATCCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTACCAACCCAAAGTTGCAGATTTCGGCATCGCCAAAGTTCTACAAGGAACTAAAGATTCAACCAACTCTGTAATCGCAGGGACATACGGCTATCTAGCCCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTATAGCTTTGGAGTAGTGTTGATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACAGAGTACGGTGAAAACAAGAACATAGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAGGGGTTCTGGAGATTCTTGACAAGAAACTAAAAGGGTTGTTCAGGGATGATATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAAAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTTGAAAAAGGAGAAGATACGTATATGACGTCACTAAAATAA 2823 42.58 MAFHSAFFLLLFFTTFSFSSSQALTTSATNNQSQFFYLMQKTASGEFLSDWDLSGGKSFCSFTGIQCNDRGHVVEIDITGQSLSGSFPEDVCSYLPELRVLRLAGTSFYGRFPSGITNCSLIEELNMSSLYLNGTIPDLSQMKQLRVLDLSYNFFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPREISLLKNLQQLELYYNELTGNIPEELGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLQNRLSGEIPGSFAECISLLRFRISFNQLIGTIPEGVLGLPHVSIIDVAYNNLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLDVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHFSFKKRLNFIWGIVIPLLIFFTGAVLFLKRRITTRKTSEIENEQTLSSSFFHLQSFDQSRILEAMVEKNIVGHGGSGTVYKIELGNGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDKKLKGLFRDDIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEKGEDTYMTSLK 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25436011 25438925 + CcPI632755_08g013520.1 Cco08g1352 185826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1352 940 SMART LRR_typ_2 288 312 IPR003591 -
Cco08g1352 940 SMART LRR_typ_2 433 456 IPR003591 -
Cco08g1352 940 SMART LRR_typ_2 240 264 IPR003591 -
Cco08g1352 940 SMART LRR_typ_2 504 528 IPR003591 -
Cco08g1352 940 SMART LRR_typ_2 166 192 IPR003591 -
Cco08g1352 940 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Cco08g1352 940 PRINTS Leucine-rich repeat signature 459 472 - -
Cco08g1352 940 PRINTS Leucine-rich repeat signature 504 517 - -
Cco08g1352 940 ProSiteProfiles Protein kinase domain profile. 647 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1352 940 FunFam receptor protein-tyrosine kinase CEPR1 630 724 - -
Cco08g1352 940 Gene3D Ribonuclease Inhibitor 301 574 IPR032675 -
Cco08g1352 940 Gene3D Transferase(Phosphotransferase) domain 1 725 928 - -
Cco08g1352 940 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 919 IPR050647 -
Cco08g1352 940 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 Pfam Leucine Rich Repeat 506 528 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 Pfam Leucine Rich Repeat 434 455 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 Pfam Leucine Rich Repeat 144 163 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 SUPERFAMILY L domain-like 257 573 - -
Cco08g1352 940 FunFam Receptor protein-tyrosine kinase CEPR1 288 574 - -
Cco08g1352 940 Gene3D Ribonuclease Inhibitor 181 300 IPR032675 -
Cco08g1352 940 Pfam Protein kinase domain 649 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1352 940 Gene3D Ribonuclease Inhibitor 37 180 IPR032675 -
Cco08g1352 940 SMART serkin_6 647 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1352 940 FunFam leucine-rich repeat receptor-like protein kinase TDR 725 926 - -
Cco08g1352 940 SUPERFAMILY RNI-like 72 352 - -
Cco08g1352 940 FunFam Leucine-rich repeat receptor-like protein kinase 182 284 - -
Cco08g1352 940 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515(InterPro)
Cco08g1352 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1352 940 SUPERFAMILY Protein kinase-like (PK-like) 625 916 IPR011009 -
Cco08g1352 940 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1352 Cco-Chr8:25436011 Cco11g1543 Cco-Chr11:28333246 5.20E-180 dispersed
Cco11g1554 Cco-Chr11:28424415 Cco08g1352 Cco-Chr8:25436011 1.30E-19 dispersed
Cco06g1954 Cco-Chr6:29734261 Cco08g1352 Cco-Chr8:25436011 9.90E-51 transposed
Cco08g1011 Cco-Chr8:21915708 Cco08g1352 Cco-Chr8:25436011 2.70E-78 transposed
Cco11g1542 Cco-Chr11:28315101 Cco08g1352 Cco-Chr8:25436011 1.10E-87 wgd
Cco04g1559 Cco-Chr4:30948394 Cco08g1352 Cco-Chr8:25436011 2.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87045 PF00069 Pkinase 7.60E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1352 - - - 0.0