Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1356 ATGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGGTTTTCAAATTCAGACTCATTCCCGCAAGACTTCCCCATCGAAGCTTTCTCCATATGCCTCTAAAGGCAGGGAAGCTGCCTTTAATTCTGGAAAACTTTCCTTCTTCTCCACAACTTTTGAGGAAGGAGAGTCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCAGAAGCTCCACAAACCTCATCTGAAGATCTGTTAAATTTGGAAGAGATAGAGATGAACAGTGGGTCAAAGTCATTCACTCCTTTGCATTACGGGATAAAAAATACTGGGCCATCCAAGGTAGAGGACAATTTTTCTTCCTATACGAGCTTGCCTAGTGGCAAGGCATCACCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTACCCATTGAGGATGGTGGAGATCATAATGGAAACCAGAAAACCAATGACTGGCATGATGACATCATAGTTTACTCTGGGAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAACGGATAATGCTGATAAAGTTGCTTCCTGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAAATCCATGGTTTGACTATATTTTCGAGAAAAAAAGCATCTAATTCTAGAAAAAGAAGACTGATAGTTGCTAGACATGAAGCTGAAATGTCCACGGGGGCTAAGGTAGTTGCAAATTTGGAAAGAATTAGAGAAACTTTAGAAAAGGAATCTGGAAAAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGCGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCATTAGTTCTATTCCTTGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGCTTTAGATTCTCAACATATATTCAGTACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGAGGAATTCAAATTCCATGGTCATTAACCAAGGCAATCAATCAGATACAAAAAGCACGAAAAATGTTGAACAATGTTGGTAGGAGATATTCGGATGACGATATAGCGAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGGAAGACATCTTTAATGTTCTTGAAGGCTTGGAATCAAGGGAGAGGCAAGTCCTGGTGCTTCGATACGGACTTATGGATTTCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGCATGCCAAAGAAGCCAAGAGGTTCACATTGCGCTTTCGGGCCATCCTAATGAAGTTGGTTACAATGAGCATATCTCAATCCTCAACGATTTCCGTCAAGGCAATTCGTGCCATTGTTGTAGAGGTGTATGTCTGGATGAGGATAATACAGAATTTCTTTGAGCTTTTGTATTCACATGTGAATTGA 1770 41.07 MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTTFEEGESISRETLKTYTCLSEAPQTSSEDLLNLEEIEMNSGSKSFTPLHYGIKNTGPSKVEDNFSSYTSLPSGKASPFGMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASWPLATRAAKEKIHGLTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLNNVGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHAKEAKRFTLRFRAILMKLVTMSISQSSTISVKAIRAIVVEVYVWMRIIQNFFELLYSHVN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25497037 25501323 + CcPI632755_08g013560.1 Cco08g1356 185830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1356 589 Gene3D - 478 537 IPR036388 -
Cco08g1356 589 Pfam Sigma-70 region 3 408 482 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 NCBIfam sigma-70 family RNA polymerase sigma factor 326 531 IPR014284 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 Coils Coil 405 425 - -
Cco08g1356 589 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 459 531 IPR013324 -
Cco08g1356 589 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 401 473 IPR013324 -
Cco08g1356 589 Gene3D - 401 477 IPR036388 -
Cco08g1356 589 Pfam Sigma-70, region 4 495 529 IPR007630 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 267 397 IPR013325 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 122 531 IPR050239 -
Cco08g1356 589 Gene3D - 213 397 - -
Cco08g1356 589 PRINTS Major sigma-70 factor signature 520 535 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 PRINTS Major sigma-70 factor signature 352 365 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 PRINTS Major sigma-70 factor signature 499 511 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 PRINTS Major sigma-70 factor signature 376 384 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cco08g1356 589 Pfam Sigma-70 region 2 330 397 IPR007627 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1356 K03093 - - csv:101206167 899.812
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g42 . . . . . . . . . . . . . Car12g00215 Sed01g1245 Cpe07g00198 . Bhi04g00884 Tan02g2529 . . Hepe10g0389 . Lcy13g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01198 Cam08g1660 Cec08g1237 Cco08g1356 Clacu08g1357 . Cre08g1144 . Csa02g02242 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007971 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 3 5 1 36