Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1363 ATGGACTCAAACCTTTTGCAACGTCAAGTTGCCTACACGAAGAGGTGCTTTTTTGAGCAGTACATAAGTTTTGTGTCTAATTTGAAGGGCAGGTTTAGCCTTACGATGCATAAGCTGATCAGGAACAGGAACCGACACAATCCTTTGTTGCAGGGTTATCTTGATCGTGATCAATTCACTCAGCTTGAAGAACTGCAAGATGATGCTAACCCGAATTTTGCTGAAGAAATTGTGTCTTTATTCTACAATGATTCAGCCAGACTCATACGGAGCATTGAACAAACCATGGTCAGTAAGCCAACGGATTTTGAAAAGCTTGACAACTACATGCACCAGTTCAAGGGCAGTAGCTCAAGCATTGGAGCCAATAGGGTGACTGATGCATGCTCACAGTTTAGAGAATACTGCTTGGCAGGCAATCTTGAAGGATGCATAAGGAGTTTCCAGGAAGTGAAACAAGAGCATGAAATTCTGAAGAAGAAGCTTGATACCTATTTCCAGCTAGTTAGACAAGCTGGGAAAGGTTGA 528 42.42 MDSNLLQRQVAYTKRCFFEQYISFVSNLKGRFSLTMHKLIRNRNRHNPLLQGYLDRDQFTQLEELQDDANPNFAEEIVSLFYNDSARLIRSIEQTMVSKPTDFEKLDNYMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEGCIRSFQEVKQEHEILKKKLDTYFQLVRQAGKG 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25551374 25554102 - CcPI632755_08g013630.1 Cco08g1363 185837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1363 175 Gene3D HPT domain 6 174 IPR036641 GO:0000160(InterPro)
Cco08g1363 175 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 70 172 IPR008207 GO:0000160(InterPro)
Cco08g1363 175 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 46 171 IPR045871 GO:0000160(PANTHER)|GO:0000160(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009736(PANTHER)|GO:0009927(PANTHER)|GO:0009927(InterPro)|GO:0016310(PANTHER)|GO:0043424(PANTHER)|GO:0043424(InterPro)
Cco08g1363 175 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 47 171 IPR036641 GO:0000160(InterPro)
Cco08g1363 175 FunFam Histidine-containing phosphotransfer protein 1 35 174 - -
Cco08g1363 175 Pfam Hpt domain 76 158 IPR008207 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1363 K14490 - - csv:101219195 262.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1363 Cco-Chr8:25551374 Cco09g0020 Cco-Chr9:151306 1.70E-39 dispersed
Cco08g1363 Cco-Chr8:25551374 Cco07g1409 Cco-Chr7:28174910 3.70E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75