Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1367 | ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCACCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAATTCCCGCCTCCTTCCTCTTTCTCCCACCAACGAACCCGAAATTACCACCACCGCGGGACCACCGCTCCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTGGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAAAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATCCATCCAACGGTGATGGTTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA | 1068 | 53.37 | MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSTVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTNEPEITTTAGPPLPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLKAQQQQQQHLLLDHHQDMIFDPSNGDGYLIHQHVGPDFRQLI | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25593433 | 25595354 | - | CcPI632755_08g013670.1 | Cco08g1367 | 185841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1367 | 355 | PANTHER | GATA TRANSCRIPTION FACTOR | 40 | 311 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Cco08g1367 | 355 | MobiDBLite | consensus disorder prediction | 178 | 242 | - | - | |
Cco08g1367 | 355 | MobiDBLite | consensus disorder prediction | 185 | 209 | - | - | |
Cco08g1367 | 355 | Gene3D | - | 238 | 289 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cco08g1367 | 355 | FunFam | GATA transcription factor | 237 | 322 | - | - | |
Cco08g1367 | 355 | SMART | GATA_3 | 239 | 289 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1367 | 355 | ProSitePatterns | GATA-type zinc finger domain. | 245 | 270 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1367 | 355 | PIRSF | Txn_fac_GATA_plant | 22 | 333 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cco08g1367 | 355 | Pfam | GATA zinc finger | 245 | 279 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1367 | 355 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 241 | 303 | - | - | |
Cco08g1367 | 355 | ProSiteProfiles | GATA-type zinc finger domain profile. | 239 | 275 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco08g1367 | 355 | CDD | ZnF_GATA | 244 | 291 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1367 | Cco-Chr8:25593433 | Cco09g0007 | Cco-Chr9:55759 | 1.40E-69 | dispersed | |
Cco11g1564 | Cco-Chr11:28532438 | Cco08g1367 | Cco-Chr8:25593433 | 1.20E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59808 | PF00320 | GATA | 1.80E-15 | CL0167 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1367 | - | - | - | 0.0 |