Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1367 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCACCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAATTCCCGCCTCCTTCCTCTTTCTCCCACCAACGAACCCGAAATTACCACCACCGCGGGACCACCGCTCCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTGGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAAAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATCCATCCAACGGTGATGGTTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.37 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSTVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTNEPEITTTAGPPLPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLKAQQQQQQHLLLDHHQDMIFDPSNGDGYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25593433 25595354 - CcPI632755_08g013670.1 Cco08g1367 185841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1367 355 PANTHER GATA TRANSCRIPTION FACTOR 40 311 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cco08g1367 355 MobiDBLite consensus disorder prediction 178 242 - -
Cco08g1367 355 MobiDBLite consensus disorder prediction 185 209 - -
Cco08g1367 355 Gene3D - 238 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco08g1367 355 FunFam GATA transcription factor 237 322 - -
Cco08g1367 355 SMART GATA_3 239 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 PIRSF Txn_fac_GATA_plant 22 333 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cco08g1367 355 Pfam GATA zinc finger 245 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Cco08g1367 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1367 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1367 Cco-Chr8:25593433 Cco09g0007 Cco-Chr9:55759 1.40E-69 dispersed
Cco11g1564 Cco-Chr11:28532438 Cco08g1367 Cco-Chr8:25593433 1.20E-81 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1367 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 54.3 7.2e-68 254.6
Cco05g0755 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 62.3 8.7e-37 150.2
Cco04g1769 . 109 285 C2C2-Gata Transcription Factor Family AT4G36240 50.3 2.4e-41 166.0
Cco10g0230 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.5 6.4e-140 494.6
Cco09g1334 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 9.6e-136 480.7
Cco10g0230 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59808 PF00320 GATA 1.80E-15 CL0167 Cco TF