Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1367 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCACCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAATTCCCGCCTCCTTCCTCTTTCTCCCACCAACGAACCCGAAATTACCACCACCGCGGGACCACCGCTCCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTGGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAAAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATCCATCCAACGGTGATGGTTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.37 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSTVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTNEPEITTTAGPPLPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLKAQQQQQQHLLLDHHQDMIFDPSNGDGYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25593433 25595354 - CcPI632755_08g013670.1 Cco08g1367 185841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1367 355 PANTHER GATA TRANSCRIPTION FACTOR 40 311 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cco08g1367 355 MobiDBLite consensus disorder prediction 178 242 - -
Cco08g1367 355 MobiDBLite consensus disorder prediction 185 209 - -
Cco08g1367 355 Gene3D - 238 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco08g1367 355 FunFam GATA transcription factor 237 322 - -
Cco08g1367 355 SMART GATA_3 239 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 PIRSF Txn_fac_GATA_plant 22 333 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cco08g1367 355 Pfam GATA zinc finger 245 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Cco08g1367 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1367 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1367 Cco-Chr8:25593433 Cco09g0007 Cco-Chr9:55759 1.40E-69 dispersed
Cco11g1564 Cco-Chr11:28532438 Cco08g1367 Cco-Chr8:25593433 1.20E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59808 PF00320 GATA 1.80E-15 CL0167 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1367 - - - 0.0