Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1373 ATGCCTGAGCTCCGTCGCAAACCACGCAGGAGCCGGGTATCCGAAGACCCAGAACCGATTGCGCACCAAACACCCGTTAAGTTAACTGTAACAACACGCCACCGAAGGCAACCTGCTAAACGCAGTGTTGGGAAGAGTATTAAGGAGGGGAAACACGCGATCGTTGCCGATGGTGACAGGGATGTTGTGAACCCTGGAATCGGTCTTGAAACGAGGCTACTGCGTGAGAACAAAGACGAAGTAGTTGGGAAGGATAAAGACCTACTGCAGCTTGGTGTTAGAGCTATGGATGAGTTCGATAGCGGTGGACGGAACGGCGATAAGGGTCCTGTAGCCGAAGATGAAGGCACGACTACTCCTCTTCCGGAGAAGGTCCAGGTTGGTGGTTCTCCATTATATAAAGTTGAGAAAAAACTGGGTAAAGGAGGTTTTGGTCAGGTGTATGTGGGTCGACGAATGGGTCCCACAAGTTTGAATGAAAGATCTGGCCCTGGAGCTGTGGAGGTAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCTTACGAGTGGCAGGTTTACAATGCACTAGGTGGCAGCCATGGTGTGCCACGAGTTCATTACAAGGGTCGGCAAGGTGACTATTATGTCATGGTTATGGACATGCTTGGACCTAGTCTCTGGGATGTCTGGAATAACAATGCTCACACGATGTCAATTGAAATGGTAGCATGTATTGCCATTGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTATGTGCATGGTGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCGCCAGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACCAAGTGGCGAGATAGTTCAACTGGTCAACATGTTGAGTATGATCAACGACCAGACGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTGCATGCACATCTTGGCAGAACTGCTAGTCGGAGAGATGACTTAGAATCACTCGCTTACACACTTGTTTTTCTTCTTCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGGCTACTTCCTCTGAAACGCTGTGCTGTTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGTATGTTGTAAATTTGAAATTTGATGAAGAGCCAAACTATGCAAGATATATCTCCCTCTTTGATGGGATTGTCGGTCCGAATCCAGATATCCGTCCAATAAACACAGATGGTGCACAAAAACTTATATTTCAGGTTGGGCATAAGAGAGGAAGGCTGTCCATGGAGGATGAAGATGATGAACAACCAAAGAAGAAAGTTCGAATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAGACCAATGAAACAAAGATACCACTATAATGTTGCTGATATGAGGCTCTCTCAGCATATTGAGAAGGGGAATGAAGATGGTTTATTTATTAGTTGTGTTGCTTCATGTTCAAACCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTACTGCTCAAGTTTATGAACTCTCACCATTCTTTCTTCACAAGGAATGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGAGCTAATAACGGGAGCTCATTGGTAGTAATGTCCAAAGGGACTCAGTACCTCCAGCAATCCTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCCACTGCCGGCAGTAGATGGGCAATTGTCATGTCACGTGGTGCAGGATTTTCTGACCAGGTTGTGGAACTGGATTTCCTGTATCCCAGTGAAGGCATTCATCGCAGGTGGGATGGTGGTTACCGCATCACATCAACTGCAGCAACTTTGGACCAGGCTGCTTTTGTTCTGAGTGTGCCAAGGAGAAAGCCTGCTGATGAAACTCAAGAAACACTCCGAACATCTGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAATCTTTATATTGCATCTATTTGCTACGGCCGAACTCTAAACTGTTCATTAACGTCGCCACCGTATTGCATCAGTTACGGACTCCTATGCTCTGGCTTTCGTTCATGTTATTCAATTATGGTTATCAAGCATCAGTGGGCTCTGGATATTCATATCCGTTTTGCTTCAAATTATGTCAGATTCAGCCATCGGCTAGTTGGCCACTTAGATCTTGCCAATTTGTTCTTCGAGAAATTCTACCTTGCTGTTGCATTCTTCTTAGAGCAAGCACATCGTGTTGTGTGGTATCTGAATTTTAAAGTAGCACCTTCATAA 2373 44.96 MPELRRKPRRSRVSEDPEPIAHQTPVKLTVTTRHRRQPAKRSVGKSIKEGKHAIVADGDRDVVNPGIGLETRLLRENKDEVVGKDKDLLQLGVRAMDEFDSGGRNGDKGPVAEDEGTTTPLPEKVQVGGSPLYKVEKKLGKGGFGQVYVGRRMGPTSLNERSGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMATSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIRPINTDGAQKLIFQVGHKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPFFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATLDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTLNCSLTSPPYCISYGLLCSGFRSCYSIMVIKHQWALDIHIRFASNYVRFSHRLVGHLDLANLFFEKFYLAVAFFLEQAHRVVWYLNFKVAPS 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25638008 25644562 + CcPI632755_08g013730.1 Cco08g1373 185847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1373 790 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1373 790 ProSitePatterns Protein kinases ATP-binding region signature. 139 172 IPR017441 GO:0005524(InterPro)
Cco08g1373 790 MobiDBLite consensus disorder prediction 1 48 - -
Cco08g1373 790 Gene3D Transferase(Phosphotransferase) domain 1 112 456 - -
Cco08g1373 790 Pfam Protein kinase domain 133 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1373 790 PANTHER CASEIN KINASE-RELATED 132 547 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Cco08g1373 790 FunFam casein kinase 1-like protein HD16 106 456 - -
Cco08g1373 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1373 790 CDD STKc_CK1 133 409 - -
Cco08g1373 790 MobiDBLite consensus disorder prediction 98 126 - -
Cco08g1373 790 SMART serkin_6 133 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1373 790 MobiDBLite consensus disorder prediction 1 17 - -
Cco08g1373 790 SUPERFAMILY Protein kinase-like (PK-like) 133 415 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1373 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2535 Cco-Chr2:37675121 Cco08g1373 Cco-Chr8:25638008 5.40E-267 dispersed
Cco08g1373 Cco-Chr8:25638008 Cco09g0014 Cco-Chr9:106378 7.50E-297 dispersed
Cco08g1373 Cco-Chr8:25638008 Cco05g0488 Cco-Chr5:3898051 5.40E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87047 PF00069 Pkinase 8.40E-16 CL0016 Cco PK