Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1375 ATGGAGGACTCCGGGACTCGACCTTCTGCCGGTAAATCGGCTGGTAATGTCGTCGCTATTGCTGCCGGTGAAGCTCACACTCTCCTTCTCACAGGAGATGGCAGGATGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGGCGGAAGCAGACGAGCTTTTCCCTGTTCGAGTTAAGCTTGGTTCGGAGGAAGAGAATCTCAAAGTTGTGGCAATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGATGGTTCAGTTTGGTGCTGGGGTTACAATATCTACGGCCAACTTGGATTTGATGGAGGGAATTCCGCCACCCCTTGCTTGCTGAAACAGTTCCTTGAGTTGGAATCTCCAGAATCTTTGACAGAAGAGTCAGGGTCAAAGAGTGAGGGGTCACTAAAGATTTGTGACATCAAAGCCGGGGGGTTGATTTCTTTTGCAATTGACGATCTTGGAGCCCTATGGATGTGGGGTAATTGTCCAAAACCAAATGGTGAGAATGAAGTTGGCTTATCTTATGTTAGCAGCTTCACACCCTCTCCGGTGTGGGAGTTCCATGGCCATACTGTAGTTAAGGTTGCTTGTGGAAATGAGCATATCGTGGCGCTGGTTACTGTTGGGGAAACCTACAATAATGGTGAAGACTTAGTTTGCTACTCCTGGGGAGATAATTCTCATGGTCAATTAGGCTTGGGAGATAGAGATGGCAGACCATACCCCCAAATTATCGAGACATTTAATGAGGCATCTCCTTGGGCAGTGTACGAAGTAGCATGCGGGGCATTCCATACTGCTTTACTTAGCCGCAGAAAGAGACCATGTGATGGCTTAGAAAGTGTGTGTTGGACATTTGGTCTCGGGGAAAATGGACAGCTTGGGCATGGAACCACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAGTTGCCACAATCTGTATCTCTGATCTCAGTTGATTGTGGCCTATTTCATACGAGTGTTGTTTCATCAGGTGGAGATCTGTGGTCTTGGGGAATGGAAAGGGGACTTGGCCTTTGTCCAGATGCTAGTTTCACTGGAACTGACACCGGCGATGCTATATCTCCCCTATCCTTCTTCTGTAATGGGTCTGAATCACCAAAATTTTTGGATCCTGTTCAAGTTGCTTGTGGGGCTGCTCATACTGTTATAGTTGCACATAATGGATATAAATTGTGGTCATGGGGACGAGGAAGAAGCGGAGTTCTTGGAAATGGTAAGACAGTCGATTGTTTTACTCCCACGATCGTCTTATGGCCGCCACTTGACGAGGATTTCAATCAAGAGGGAACTGAAACCAAAAGCGAGGAAGATAAAGTTGAACAAAATAAACCCGAGGAAGTAACCGAAGAAAACAAAAAGCTATTAATAGCTATGGAGGAAATAAAACTTCTTCAAGAGAAATTATCTATCATGGAACGGTATGCAAGCTTTCTTCATGGCTCAATATTTGGCAAACCTTTCCAAGAGGGAGATATCCCACTCTCATTGGGAAATTCTGGTACTCTCGACATTGCTAAGGAATGGGAAAGCATGTTAGAGTCCACAGATCGCTCAAATCTTTTAAGGTTGGAGGTGGTCTATCAAAACATGCTGGCAAGTATTAAAGACAAGATAATGAAGAAAAGGGTCCAGGAGCTTGTGAAGGAGTTTCTTCAATCATCAATGTCTCCAAATTAG 1716 45.4 MEDSGTRPSAGKSAGNVVAIAAGEAHTLLLTGDGRMYSWGRGMFGRLGTGAEADELFPVRVKLGSEEENLKVVAIAAGSYHSLALADDGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLELESPESLTEESGSKSEGSLKICDIKAGGLISFAIDDLGALWMWGNCPKPNGENEVGLSYVSSFTPSPVWEFHGHTVVKVACGNEHIVALVTVGETYNNGEDLVCYSWGDNSHGQLGLGDRDGRPYPQIIETFNEASPWAVYEVACGAFHTALLSRRKRPCDGLESVCWTFGLGENGQLGHGTTQNELLPKPVKELPQSVSLISVDCGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTDTGDAISPLSFFCNGSESPKFLDPVQVACGAAHTVIVAHNGYKLWSWGRGRSGVLGNGKTVDCFTPTIVLWPPLDEDFNQEGTETKSEEDKVEQNKPEEVTEENKKLLIAMEEIKLLQEKLSIMERYASFLHGSIFGKPFQEGDIPLSLGNSGTLDIAKEWESMLESTDRSNLLRLEVVYQNMLASIKDKIMKKRVQELVKEFLQSSMSPN 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25647516 25650222 + CcPI632755_08g013750.1 Cco08g1375 185849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1375 571 Coils Coil 460 480 - -
Cco08g1375 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 158 212 IPR000408 -
Cco08g1375 571 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 263 273 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 199 215 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 397 418 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 327 345 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 158 174 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 91 107 IPR000408 -
Cco08g1375 571 PRINTS Chromosome condensation regulator RCC1 signature 72 85 IPR000408 -
Cco08g1375 571 MobiDBLite consensus disorder prediction 439 459 - -
Cco08g1375 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 222 276 IPR000408 -
Cco08g1375 571 SUPERFAMILY RCC1/BLIP-II 13 313 IPR009091 -
Cco08g1375 571 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 134 562 IPR051210 -
Cco08g1375 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 88 IPR000408 -
Cco08g1375 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 89 157 IPR000408 -
Cco08g1375 571 SUPERFAMILY RCC1/BLIP-II 260 429 IPR009091 -
Cco08g1375 571 Pfam Regulator of chromosome condensation (RCC1) repeat 404 429 IPR000408 -
Cco08g1375 571 Pfam Regulator of chromosome condensation (RCC1) repeat 88 153 IPR000408 -
Cco08g1375 571 Pfam Regulator of chromosome condensation (RCC1) repeat 287 333 IPR000408 -
Cco08g1375 571 Pfam Regulator of chromosome condensation (RCC1) repeat 33 85 IPR000408 -
Cco08g1375 571 Pfam Regulator of chromosome condensation (RCC1) repeat 224 273 IPR000408 -
Cco08g1375 571 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 75 85 IPR000408 -
Cco08g1375 571 MobiDBLite consensus disorder prediction 435 459 - -
Cco08g1375 571 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 199 209 IPR000408 -
Cco08g1375 571 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 337 IPR000408 -
Cco08g1375 571 Gene3D - 221 473 IPR009091 -
Cco08g1375 571 Gene3D - 3 220 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1375 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1375 Cco-Chr8:25647516 Cco11g0901 Cco-Chr11:12177748 8.40E-24 dispersed
Cco08g1375 Cco-Chr8:25647516 Cco03g1309 Cco-Chr3:26050196 2.40E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33