Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1380 ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCCACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTACTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCAAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGATAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA 666 43.99 MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAATKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVKLPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25730078 25730743 - CcPI632755_08g013800.1 Cco08g1380 185854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1380 221 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Cco08g1380 221 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 MobiDBLite consensus disorder prediction 1 43 - -
Cco08g1380 221 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677(InterPro)
Cco08g1380 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 IPR051032 -
Cco08g1380 221 SMART rav1_2 41 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 CDD AP2 42 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 Pfam AP2 domain 40 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1380 221 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1380 Cco-Chr8:25730078 Cco11g0247 Cco-Chr11:2394036 6.80E-38 dispersed
Cco07g1406 Cco-Chr7:28118035 Cco08g1380 Cco-Chr8:25730078 2.80E-38 transposed
Cco11g1567 Cco-Chr11:28561775 Cco08g1380 Cco-Chr8:25730078 4.90E-57 wgd
Cco04g1652 Cco-Chr4:31796602 Cco08g1380 Cco-Chr8:25730078 2.50E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59810 PF00847 AP2 5.30E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1380 K09286 - csv:101206242 340.117