Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1384 ATGGCCAGAATTGCAATGGGAAGCATCGGCGAGGCCTCCCAACCCGACTGCATCCGAGCCCTCATTGTCGAGTTCATTGTCACTTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCAAACACACTAGTGGGTTTATTTGCCGTTGCCGTCGCACATGCGCTTGTAGTGGCTGTGATGATTTCCACAGGTCATATTTCCGGTGGCCACCTCAACCCCGCCGTCACTCTTGGTCTCCTTTTGGGTGGCCACATCACAGTTGTTCGATCCGCTCTATATTGGATCGTTCAGTTACTGGCAGCTTCAGCTGCTAGCTTTTTGTTAACGTACCTCACCGGAGGCTTGGTCACTCCAATTCATACATTAGCAAGCGGAGTTGGTTATATTCAGGGAGTGATATGGGAGATTATTCTAACCTTTTCCTTGCTATTCACTGTGTATGGAACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTCGGGCCAGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTTCTCATTCAAAGATCTCATGTGCCTCTACCTAGGGAGGAAGATGGCTATTAG 744 50.27 MARIAMGSIGEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLLGGHITVVRSALYWIVQLLAASAASFLLTYLTGGLVTPIHTLASGVGYIQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25750245 25751360 - CcPI632755_08g013840.1 Cco08g1384 185858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1384 247 SUPERFAMILY Aquaporin-like 14 241 IPR023271 -
Cco08g1384 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Cco08g1384 247 FunFam Probable aquaporin TIP1-1 2 244 - -
Cco08g1384 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g1384 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g1384 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g1384 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g1384 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g1384 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco08g1384 247 PANTHER AQUAPORIN-8 1 237 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cco08g1384 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Cco08g1384 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1384 Cco-Chr8:25750245 Cco09g0180 Cco-Chr9:1649469 3.00E-66 dispersed
Cco08g1384 Cco-Chr8:25750245 Cco04g1150 Cco-Chr4:26865090 1.20E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1384 K09873 - csv:101205380 447.973