Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1389 ATGCTCCGACCTAACGCCGAACGACGCCGTTTTCCGATAGCTTTCGGGAATAATCATCATGATGGGACTGATTCCAAGGCTGCAAGAAAATTCATTCAGATTGACTCTATATATATTGATCTATTTAGCTCCGATCATAAATGTGATGACCAGAAGTGTGAACTTTTCTCCATCCGTGGTTATGTATCTGATATGCGCAAAAATGATTGGAAGATATGTTGGCCATTTTCTGATGTTGATAATGGCCACAAGTTGGATGAGCCTATACTCTCGGTCCCACCTGTATTTGATCCGAGTTTCGACCTGCACCAAGGCAAAAGTCATTGGAAAGAGAGTTCTGATAAAGCTGCTGATCAAGGTTTCCTCTTTGATAGCTGTCTCAATCTTGGAAAATTTTCAAATTCTTCCACAAAAGCTCCAAAACAAGATGTAATTAATGGAAGAACAATGGCTGATAATGCTTCTAATTCGAGTTGCCAACCCTCAAGTTGTGATCAGAAGCAAAAGAAACTTGATGTTGCAGATAACTGTACTGCTGCTCTTATATCACAAAGTGAGCCAGGTTTTGCAAGTCGTGGAGTTGCTGAGATTGAGCCTGTTAGTGGAAATTCCATTCTCAAAGCAACTGAGGAAAGCCTTGCAGCACTTCAGGATGGAAAACAGACTCCAGCAGATTGTCTAAATGGACAGTTAACCTTGGTGGTATCAAAGAATGACAGTACGGTAGATGTAGCCCAAGGACATCATTATATTAAATTTCAAGAAAATGGAGATGGTTCCATGGAATCAAATAAAAGCACGGTTTCATCATCTGAAAGTGCTGAAACAGTTGAAAACAGTCCTCATCATTTTCATCAAGGAAAGTTACATCGTCGAAGAACCCCAAAGATTCGTCTATTGACTGATTTGCTAGGAGACAATGGAAATATGATAGCTAAACATCATGTTGAAAGTTCTCCATCCAACGGGTCTCCTGAGCCATCAATACAGGCAGATGTGAGCCATGCTTCCAAATGTCAGGTAACCATAGAGGAAGATATTTGGCATTCAGATCATAAAGGGGAAAGAAGGTTTCCCCGGAACGGGAAGTGTAGGCATCAAAATATTCCCTCTTCTTCCAGTGTGGATAAGCGAATTCAAACATGTAGAGGGGAAATAGAAAGCTCTGTTTCTAGTTTAGGAAATGAAAATGCTCATTCAGGAATAAAAAAGACCATGAAGGGCCCTTGGAGCAGCTACAAAACGGATGGAAACAATAGTTTAAGAAGGAAGAAAAGTAAAAAGTTTCCAGTGGTCAATCGATACTCTGTGCCCTTAATGTCATCTAAAGTTAAAGATCAACGTGAGGTTGCAGTGGATAGTGCTGCTATCTTAGCACATCACAATGAATTTTCTAGCAGAACTCCACGCTCAATATCATTGAATGCCATGGAATCTAAATCTAGCACATCTAAGAACCCAAATTCAAGCAAGGAGCCTGTGATTTTTGAAGGGCCCACTAATGTATTCCAATGGAACAATGGAATGCTCTGGAGGGGTTCAGTTACACCCAAAAATGTAGAAACCATGAATAGTAGGTCTTTAGCTAATCCTTTTCCAAATTCCAAAAACAATGAAACAGAATTGCATCCTTCTCTCAATAACTATTCCAATCCACAAAGGGACCACAAAGGAATCCGTCATCAAGGAGAAAACGAGCTGGCTACTTTTTTGCCTGAGCAAGATGACACTTCCATAATTAGTAAATTGAATGATATCGAAACGAGTAATCTTGGATATCCAAATCATCCTCATCAAACTTCTGATATTTTCTGTGGACAAGGAGTACATGGTGTGCTGAACAGTAAAATGGCCAACTTGAGAACGCCTCTTCCAAGACAAAACGCAGATCCTCACGCAGATAATTATTGGTCACAGCTGCAGAATAAGGAACAGGATTTATACAGAAGAGGCAATGGTAAAAGAGCTACTGAAGCTCAGGAACCTTTGGCTCTAAAGAAAAGACAGATTAACCAGAGAATGGACCAGGCATCTGACCGTGGGGCTTCCGATGACATCCCCATGGAAATCGTCGAACTAATGGCAAAGAATCAGTATGAAAGACGTCTTCCTGATGCTGAGAATAATAATATACATGTTTCAGAAACAGGCAAATTCTCAAAGGCTGTTCATGTGAATAATTATGGCGACGTATATAGAAATGGGAGAGAATTATTACAAAAGCCTGAAAATCTTCAACAAAATGCTCAGGCAAGGAATGGAGGAAATGATGTGACTCGTGTGGGAAAAGTTGTGGAAACCAGGAAACAGAAGTCAGCAGATTATTTCTCAAATATTGGGGAATCTCAGTTCGGTACGAACTATCCACAGAAGAATCATATGCTCGGGTATGATGGTTCTATTCATTCACTAGAGGAACCATCAAATGGTATTCAATATTCTTCCATTGGATCTAAAAGAAAAAGTTGTACTGAGATTAGAAAATGTAATGGAACTACAGTGGAATCAGGTCCCTACAACTCCAAAGTACAATCTTCTGAAGGATGCATAGATCATTTACCTGTTTCAGAACAGAATATAGAAGCAGCTTACATATGGTCTTCTTCTTCTTTGATGCCAGATCATCTGTCCAATGGATATCAGAAATTTCCAGCTCATTCGACCGACAGCAGAAGAATCTCAAGTCCGAGATCATTGCAGATGGGAAATGCAAATGCACAGAATTATCCTAATCATCACCCTACCAACCTAAAAAGGCATGGTAGGCAAAACAGTTCTGAAGCACACAGCCAGAGATTTGCAGAAAATTCATTTTGTCGCCATCCTAATGTGGTTGAGTTTCACCATAATCCGGTTGGTTCATTGGAGTTGTACTCTAACGAAACCATATCGGCAATGCACTTGCTTAGCCTCATGGATGCCAGAATGCAACCTAATGCACCCATGACTTCAGGTGAGAAGCATAAATCATCCAAGAAACCTCCTGTTCCTCGTCCTCGAAAAGCTAAAGAATTTTCCACGAGGGACATTTGTTTCAATAAGAGCATCCAGGACATAAACCAATTTTCATCTGCTTTCCATGACGAAGTTCGTATTTCAGCAACCAATGCATGTGCTAGTACCTTCCAGTATAGTAGAGGATTTGGAACCGGTACCAATTTTTCCGGGCAAGCTGTCTTTAGGTCTCAAAATGCAGCAACAATGAAATGCTCAGATCCATCTTCGTGGAGCAAAGACCAAACGCTATCAAAGTCTCAGTTCCGAAGTGGTGATCTGCACACTGATGAAAGAATGTTTCCTGTTAATGGTATAGAGAAAGGTCTGGTAAATGCATCTAATTCCGAAGTGTTCGTATTGGCGCATCACATGGAAAGAAACTCTGAGGAACGCAAATTGGCAGCTCATACCAGAACTCTGCAAAAGGAGAAAAGCGCTTCTGACACTGAAATATGTAGTATCAACAAAAATCCTGCTGATTTTAGCTTGCCTGAAGCAGGAAATATATACATGATTGGAGCTGAAGACTTCAATTTTGGAAGAGTTCTTTTTTCTAAGAACAGATCTAGCTCTATTTATTTCAATGATCGGTACAAACAGTAG 3600 40.31 MLRPNAERRRFPIAFGNNHHDGTDSKAARKFIQIDSIYIDLFSSDHKCDDQKCELFSIRGYVSDMRKNDWKICWPFSDVDNGHKLDEPILSVPPVFDPSFDLHQGKSHWKESSDKAADQGFLFDSCLNLGKFSNSSTKAPKQDVINGRTMADNASNSSCQPSSCDQKQKKLDVADNCTAALISQSEPGFASRGVAEIEPVSGNSILKATEESLAALQDGKQTPADCLNGQLTLVVSKNDSTVDVAQGHHYIKFQENGDGSMESNKSTVSSSESAETVENSPHHFHQGKLHRRRTPKIRLLTDLLGDNGNMIAKHHVESSPSNGSPEPSIQADVSHASKCQVTIEEDIWHSDHKGERRFPRNGKCRHQNIPSSSSVDKRIQTCRGEIESSVSSLGNENAHSGIKKTMKGPWSSYKTDGNNSLRRKKSKKFPVVNRYSVPLMSSKVKDQREVAVDSAAILAHHNEFSSRTPRSISLNAMESKSSTSKNPNSSKEPVIFEGPTNVFQWNNGMLWRGSVTPKNVETMNSRSLANPFPNSKNNETELHPSLNNYSNPQRDHKGIRHQGENELATFLPEQDDTSIISKLNDIETSNLGYPNHPHQTSDIFCGQGVHGVLNSKMANLRTPLPRQNADPHADNYWSQLQNKEQDLYRRGNGKRATEAQEPLALKKRQINQRMDQASDRGASDDIPMEIVELMAKNQYERRLPDAENNNIHVSETGKFSKAVHVNNYGDVYRNGRELLQKPENLQQNAQARNGGNDVTRVGKVVETRKQKSADYFSNIGESQFGTNYPQKNHMLGYDGSIHSLEEPSNGIQYSSIGSKRKSCTEIRKCNGTTVESGPYNSKVQSSEGCIDHLPVSEQNIEAAYIWSSSSLMPDHLSNGYQKFPAHSTDSRRISSPRSLQMGNANAQNYPNHHPTNLKRHGRQNSSEAHSQRFAENSFCRHPNVVEFHHNPVGSLELYSNETISAMHLLSLMDARMQPNAPMTSGEKHKSSKKPPVPRPRKAKEFSTRDICFNKSIQDINQFSSAFHDEVRISATNACASTFQYSRGFGTGTNFSGQAVFRSQNAATMKCSDPSSWSKDQTLSKSQFRSGDLHTDERMFPVNGIEKGLVNASNSEVFVLAHHMERNSEERKLAAHTRTLQKEKSASDTEICSINKNPADFSLPEAGNIYMIGAEDFNFGRVLFSKNRSSSIYFNDRYKQ 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25789336 25795344 - CcPI632755_08g013890.1 Cco08g1389 185863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1389 1199 MobiDBLite consensus disorder prediction 882 933 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 978 1003 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 882 914 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 465 494 - -
Cco08g1389 1199 PANTHER PROTEIN EMBRYONIC FLOWER 1 18 1199 IPR034583 GO:0009910(InterPro)|GO:0045892(InterPro)|GO:0048367(InterPro)
Cco08g1389 1199 MobiDBLite consensus disorder prediction 351 378 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 986 1003 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 390 425 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 257 277 - -
Cco08g1389 1199 MobiDBLite consensus disorder prediction 255 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2379 Cco-Chr9:37997372 Cco08g1389 Cco-Chr8:25789336 2.10E-39 transposed
Cco11g1573 Cco-Chr11:28612968 Cco08g1389 Cco-Chr8:25789336 4.90E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g314 . . . . Bpe02g01176 . . . . . Cma01g01433 . Car09g00566 . . Cpe07g00222 . Bhi04g00833 . . . Hepe10g0350 . Lcy13g1395 . . . . . . . . . Cone17ag1115 Cone20ag0605 Lsi04g02336 Csa03g04557 Chy04g00145 Cme03g01733 Blo17g00076 . Bda01g00931 Bda13g01337 Bpe14g00510 . . . . Cmo01g01482 Cmo09g00622 Cma09g00640 Cma12g00259 . . . Cpe02g00515 Bhi09g02589 Tan01g3941 . . Hepe01g2227 Mch11g0777 . Cla08g01230 Cam08g1689 Cec08g1268 Cco08g1389 Clacu08g1387 . Cre08g1172 Lsi08g01093 . Chy03g01239 Cme04g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001356 2 9 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 3 1 73