Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1390 ATGGTGAATTCCGTGGTGGGGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGTTGAACCATGACCCTGGGCAAGCGAAAGATGTTGTTAAAGGTATAAAGAAACGCCTTGGAAGCAAGAACGCAAAAGTTCAACTTCTTGCCCTGACGCTGTTGGAAACAATCATTAAGAATTGTGGGGACATTGTTCATATGCATGTGGCTGAGAAGGGTCTTCTTCATGAGATGGTAAAAATGGTGAAAAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATATTGATTCTGATAGATACTTGGCAAGAAGCTTTTGGAGGCCCTAGGGCAAGATATCCACAGTATTATGCCGCATACCAGGAATTGTTGCGTGCTGGGGCAGTTTTTCCCCAGAGATCTGAGAGCTCTGCACCTGTATTCACCCCCCCACAAACACAACCTTTGTCATCGTATCCGCCTAATCTACGGAATCCTGATCATAATCAGCAAGATGGTGCTGAGACCTCTGCTGAGTCTGAGTTTCCGACCTTAAGCCTGACTGAAATTCAAAATGCTCGAGGAATTATGGATGTTCTTTCAGAAATGCTTAATGCATTAGAACCAGGGAATAAAGAGGCTATCAGACAGGAAGTTATTGTTGACTTGGTTGACCAATGCCGTACTTACAAACAGAGGGTGGTTCACCTTGTTAACTCAACTGCGGATGAGTCACTACTTTGCCAAGGACTTGCACTTAATGATGATCTTCAGAGGCTACTTGCTAGGCATGAATGTATTTCTTCTGGAAATCCTGTTGTTCAGAAACCAAAGTCTGAATCTGCTACAACACTCGTCGATGGAGACCGGCCTCTTATCGACACTGGTGATAACAGCAAACAGCCTGACACAAAAGCTGCCGCGTCAAATGCCGGTGAAGGTTCTCAAACCCTGAACCAGTTGTTGCTTCCTGCACCAGCTGCAACTAATGGGGGGCCTCCTCCAGGCAGAGTTGAACCCAATGTGGACCTGCTGAGCGGTGACTTCAATTCACCCAAGGCAGAGACTTCATTGGCTCTTGTTCCTCTTGGAGAGCAACAACCCAATCCTCCTGCATCGGATCAAAATGCTCTTGTTCTATTTGATATGTTCTCTGATGGTAACAATGCCTCTAATCCTGCAAATCCCCCTCCTATCAATCCCGGTGGGCAACCCCCACACCCACATGCTTCCCAATTTCAACAGCAGCAACCGCTGCCGCAGCAGCAGCAGCAGCCTAATGTTCATTCCCCACAAGCTGGATTATATCCAAATGGGAATGTCATGAACATGGGTTCGCCTAATTATGAGCAATCGATGTACATGCAGGGCCCAGGTTCTGCATGGAATGGTCAAACTTCTCCTCAGCAGCAACAGCAACCCCATTCACCTGTCTATGAATTCTACATCCTCGTGTTTCCTTATTCCTGGGAGTCACGAGTTTTCTGTGTTCTTTCTGCTAATGTTCTGTTGCGTTCGCAAACTGGTTCATTGCCGCCTCCACCCTGGGAAGCTCAGTCTTCTGATGATGGTAGCTCAGTATCAGGCTCTCATTACCCTCACCCAATGCAGGTTACTACTCAGGTTATCGTCTCACACGGACTCGGTGGACATCCCCAAGGACCTCAATCAATGGGGAACGAGGTTGTAGGTATAGGTATGTACATCCAGCCAATAACGAGTGGTCAAATGTCTAACATGAATAGCCATGTTAATCCAAACCATCAGTTGGGTATGCCAATGCCTCCGCAGATCCCTGGCATGCAAAATATGGGTATGCCGACGCCTCCGCAGATCCCTGGCATGCAAAATATGGGTATGTCGACGCCTCCGCAACATCCGCAAGCTAACCAGATGACACAACCCTATTACCCTCAACAGATGTATGGCAACCACAACCAATACAACCCTGGCTATGGCTATGGTCATGGTCAACCTCAGGTTCCCCAATATCTTGAGCAGCAAATGTATGGCCTGTCCGTTAGAGATGATATGAGTATGAGCAATTTGTCTTCTCAGGCTTCTGCTTTATCTTATGTGCCTCCCATGAAGCCAGCCAATAAACCAGAGGATAAACTGTTCGGTGACCTCGTTGACATTGCGAAATTCAAACCCGGGAAATCGACTCCTGGTAGAGCTGGTAGCATATTAGAATCAAAAGACAGACCGCAAAGCACGTTCCATAGGTATCCTCTCCGATTAAGGCTTCGGCGCTTCATCCTTTGCGGCATCTTCCAATTGCCTCGAGCTCGTTTCTGGACGACAAATCGATCTTATTGGCGATTTTTTTTTGGTACCGGTTGCAGTTTGTCGGCCGGTAGTTTTGCTGGTTTGAGCATTCTAGGCTTGAAGCTGCTTGTTTTGTCTGGGAGAATCTATAATGCAGTTATAGTATCTTTCCTTGTGGTGACTTTATTGAAATTTATCTTCGCCATTCAAGTTCAATTTCATTCCAGCGCCTCAAGAGCAAGGTTGTTCAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCAGATATTCAATTGGTTTGTGACGATTCTAATATTTTTAAATGGACTGCCCTAATCAAGGGACCGTCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTCTCCGTACCTGAGCAATACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGATATATTGAAGAATGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCTGATAGCCCCCTAAACTGTGATTCTGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGATATCAATCAATGGCAAAGATGTACACAAGGCTTGCTGCCATGCCCAAAAAGGGTTGA 2964 46.42 MVNSVVGRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRLGSKNAKVQLLALTLLETIIKNCGDIVHMHVAEKGLLHEMVKMVKKKPDFRVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSESSAPVFTPPQTQPLSSYPPNLRNPDHNQQDGAETSAESEFPTLSLTEIQNARGIMDVLSEMLNALEPGNKEAIRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHECISSGNPVVQKPKSESATTLVDGDRPLIDTGDNSKQPDTKAAASNAGEGSQTLNQLLLPAPAATNGGPPPGRVEPNVDLLSGDFNSPKAETSLALVPLGEQQPNPPASDQNALVLFDMFSDGNNASNPANPPPINPGGQPPHPHASQFQQQQPLPQQQQQPNVHSPQAGLYPNGNVMNMGSPNYEQSMYMQGPGSAWNGQTSPQQQQQPHSPVYEFYILVFPYSWESRVFCVLSANVLLRSQTGSLPPPPWEAQSSDDGSSVSGSHYPHPMQVTTQVIVSHGLGGHPQGPQSMGNEVVGIGMYIQPITSGQMSNMNSHVNPNHQLGMPMPPQIPGMQNMGMPTPPQIPGMQNMGMSTPPQHPQANQMTQPYYPQQMYGNHNQYNPGYGYGHGQPQVPQYLEQQMYGLSVRDDMSMSNLSSQASALSYVPPMKPANKPEDKLFGDLVDIAKFKPGKSTPGRAGSILESKDRPQSTFHRYPLRLRLRRFILCGIFQLPRARFWTTNRSYWRFFFGTGCSLSAGSFAGLSILGLKLLVLSGRIYNAVIVSFLVVTLLKFIFAIQVQFHSSASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMAKMYTRLAAMPKKG 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25803409 25816228 - CcPI632755_08g013900.1 Cco08g1390 185864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1390 987 SMART VHS_2 2 134 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g1390 987 Gene3D Ubiquitin Conjugating Enzyme 830 982 IPR016135 -
Cco08g1390 987 MobiDBLite consensus disorder prediction 142 184 - -
Cco08g1390 987 MobiDBLite consensus disorder prediction 297 324 - -
Cco08g1390 987 MobiDBLite consensus disorder prediction 270 350 - -
Cco08g1390 987 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 908 924 IPR023313 -
Cco08g1390 987 SMART ubc_7 836 983 - -
Cco08g1390 987 FunFam TOM1-like protein 2 1 148 - -
Cco08g1390 987 Pfam VHS domain 3 128 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g1390 987 Pfam Ubiquitin-conjugating enzyme 837 976 IPR000608 -
Cco08g1390 987 SUPERFAMILY UBC-like 827 983 IPR016135 -
Cco08g1390 987 SUPERFAMILY GAT-like domain 140 270 - -
Cco08g1390 987 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g1390 987 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cco08g1390 987 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 833 983 IPR000608 -
Cco08g1390 987 CDD VHS 2 132 - -
Cco08g1390 987 PANTHER TOM1-LIKE PROTEIN 1 727 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cco08g1390 987 Gene3D - 1 148 IPR008942 -
Cco08g1390 987 FunFam protein PEROXIN-4 isoform X1 831 982 - -
Cco08g1390 987 CDD GAT_GGA-like_plant 189 267 - -
Cco08g1390 987 ProSiteProfiles GAT domain profile. 181 269 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g1390 987 MobiDBLite consensus disorder prediction 510 533 - -
Cco08g1390 987 CDD UBCc 837 978 IPR000608 -
Cco08g1390 987 Pfam GAT domain 196 267 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cco08g1390 987 Gene3D - 184 273 IPR038425 -
Cco08g1390 987 MobiDBLite consensus disorder prediction 407 473 - -
Cco08g1390 987 MobiDBLite consensus disorder prediction 384 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1390 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1390 Cco-Chr8:25803409 Cco02g2028 Cco-Chr2:33248499 1.40E-26 dispersed
Cco01g0680 Cco-Chr1:7081861 Cco08g1390 Cco-Chr8:25803409 4.90E-06 transposed
Cco02g1567 Cco-Chr2:28339076 Cco08g1390 Cco-Chr8:25803409 3.20E-30 transposed
Cco04g0419 Cco-Chr4:13644934 Cco08g1390 Cco-Chr8:25803409 5.70E-52 transposed
Cco07g1113 Cco-Chr7:24676801 Cco08g1390 Cco-Chr8:25803409 2.20E-06 transposed
Cco08g0766 Cco-Chr8:19456410 Cco08g1390 Cco-Chr8:25803409 1.70E-79 transposed
Cco10g2247 Cco-Chr10:35398463 Cco08g1390 Cco-Chr8:25803409 1.90E-74 transposed
Cco11g0825 Cco-Chr11:9735801 Cco08g1390 Cco-Chr8:25803409 2.70E-90 transposed
Cco11g1575 Cco-Chr11:28639394 Cco08g1390 Cco-Chr8:25803409 3.00E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45