Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1393 ATGGAGAATTCTGTTCTTGACCAAGAAATGGCCAAGAAAGTGCTTCGTCAGGTCGAGTTCTATTTCAGTGACAGTAATCTTCCTAGAGATTGTTTTCTTAGGAAAAATATTAGCGAAAGCCCTGATGGAATGGTCGATTTGTCTTTAATCTGTTCGTTTTCTCGGATGAGAGGCCATCTTGAATTGAAACACGAGATGAAAGATGAGATTCCAGAAGATACTATGAAGGCCGTCGCTGAAACTCTAAGAAGCTCTTCAACTCTTAAAGTTTCTGAAGATGGGAAGAGGGTTGGTAGAGCTACTGAACTCCCAAAGCCTGAGGAGTTAATAGAACAATTGGATGTTAGAACCGTGGCTGCATCACCATTTGAATATGATGTGAAGCTTGAAGATGTAGAAGCTTTCTTTGATCGAGTTGCAAAGGTCAGTAGTGTGAGGCTTCCCCGTAATGTTGCAGATAAACGGGTATTATGTGGAACTGCCTTGGTAGAATTTTCTACTGAGGAAGATGCAGAAAAAGTTTTGAAGGAAAGCTTGGTTTATGCTGGTGCCAAGTTAGAATTGAAACCAAAGAGGGATTTTGATGAGGAGAGAGCAAAAGAGACAGAGAAGTTTGAAAGTTCACGCTCAACCTCAGGTGCAAACCGCAATAATAATAATTTCCCAGAATCAAGCTACCCTAAAGGCTTAATTGTCGCCTTTACATTGAAAAGCATGTCTTCTGAAAGTTCTGCCGAGGAAAATGGATCTAATGGTGTAGCCGCTGATAAGACTGAATGCAAAATAGATGAAGGATTAGATTCCTCAAAGAATGACTCTGAGAAAACTGAGCAAATAGAAGCAAATATGAGTAAAGACGAAGAAATTAAGGAAAGTGCTGATGATAAGAATGGAGAGGCTGAACAGAAAAATGATTCCGTCAATGAAGAGAGTTCTGAAGTGGAAGAACAATCTATGGATGATCCCAATGATGAACATGAAGAGGCTGAAGAAAAGCTCACAGCTGTTAAATCCAAGAACAATATGAATGTGGTTTCGCGCGAGGATTTGAAGGCTGTTTTTCAGAAGTTTGGAAGTGTCAAGTTCATTGATTTTAAGATTGGAGACGAGTCGGGCTATATCAGGTTTGAGGAGCCTGAAGCTGCCCAGAAAGCCCGTGCCACTGCACTACTAGCTGAGCAAGGAGGACTGGCCGTGAAGAATTTTATTGCCACTTTAGAACCAGTGTCAGGTGAGGCTGAGAAGGAGTATTGGAGTCTACTTCGCAGCAACCAAGAGAAGCATCATCGCGACTTTAAAGGAAACCGTGGAAGGGGTGGTAAATTCAATCGAGGTGGAAAGCATGGTCGGTCAAGGGGGCACGACAATCATCGAGGTCGCCCCAACAAAGCTCAAAAGATCTCTAAGTGTAATGGTTTGAGGCGACGATTCCGTCATAAAGATTTTATACTATCTTCTGTTTCTACAGCTCAGGAACTGTGTCTGACGAATTCTCTCCTATATGTTTCCTGTTTCTGCAGTCCATCGGATTTTCGAATGAAAACTAATTGCTGCCTCTTCTTAGGAAGAGTAGAATGA 1578 41.89 MENSVLDQEMAKKVLRQVEFYFSDSNLPRDCFLRKNISESPDGMVDLSLICSFSRMRGHLELKHEMKDEIPEDTMKAVAETLRSSSTLKVSEDGKRVGRATELPKPEELIEQLDVRTVAASPFEYDVKLEDVEAFFDRVAKVSSVRLPRNVADKRVLCGTALVEFSTEEDAEKVLKESLVYAGAKLELKPKRDFDEERAKETEKFESSRSTSGANRNNNNFPESSYPKGLIVAFTLKSMSSESSAEENGSNGVAADKTECKIDEGLDSSKNDSEKTEQIEANMSKDEEIKESADDKNGEAEQKNDSVNEESSEVEEQSMDDPNDEHEEAEEKLTAVKSKNNMNVVSREDLKAVFQKFGSVKFIDFKIGDESGYIRFEEPEAAQKARATALLAEQGGLAVKNFIATLEPVSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKISKCNGLRRRFRHKDFILSSVSTAQELCLTNSLLYVSCFCSPSDFRMKTNCCLFLGRVE 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25847837 25856433 - CcPI632755_08g013930.1 Cco08g1393 185867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1393 525 CDD RRM1_La 117 189 - -
Cco08g1393 525 FunFam La protein 2 6 106 - -
Cco08g1393 525 Pfam La domain 15 58 IPR006630 -
Cco08g1393 525 SUPERFAMILY RNA-binding domain, RBD 116 387 IPR035979 GO:0003676(InterPro)
Cco08g1393 525 Pfam RNA recognition motif 124 176 IPR000504 GO:0003723(InterPro)
Cco08g1393 525 Gene3D - 2 104 IPR036388 -
Cco08g1393 525 SMART la 8 100 IPR006630 -
Cco08g1393 525 SMART rrm1_1 340 407 IPR000504 GO:0003723(InterPro)
Cco08g1393 525 SMART rrm1_1 117 189 IPR000504 GO:0003723(InterPro)
Cco08g1393 525 MobiDBLite consensus disorder prediction 440 459 - -
Cco08g1393 525 ProSiteProfiles xRRM domain profile. 329 450 IPR014886 GO:0003723(InterPro)
Cco08g1393 525 MobiDBLite consensus disorder prediction 242 334 - -
Cco08g1393 525 MobiDBLite consensus disorder prediction 208 225 - -
Cco08g1393 525 CDD LA_like_plant 11 99 - -
Cco08g1393 525 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Cco08g1393 525 Coils Coil 290 317 - -
Cco08g1393 525 MobiDBLite consensus disorder prediction 257 310 - -
Cco08g1393 525 Pfam RNA binding motif 344 434 IPR014886 GO:0003723(InterPro)
Cco08g1393 525 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cco08g1393 525 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cco08g1393 525 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cco08g1393 525 PANTHER LUPUS LA PROTEIN-RELATED 9 452 IPR045180 GO:0003723(PANTHER)
Cco08g1393 525 MobiDBLite consensus disorder prediction 194 225 - -
Cco08g1393 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723(InterPro)
Cco08g1393 525 MobiDBLite consensus disorder prediction 311 327 - -
Cco08g1393 525 MobiDBLite consensus disorder prediction 428 465 - -
Cco08g1393 525 Gene3D - 318 436 IPR012677 -
Cco08g1393 525 SUPERFAMILY Winged helix DNA-binding domain 7 103 IPR036390 -
Cco08g1393 525 Gene3D - 110 206 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1393 K11090 - - csv:101204162 756.518
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33