Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1394 ATGGGTTCTTATCTAAGGGAAATAGAAGGAAAGTTATCGAATGACCCATTTTTTACAGAGAAGATGAGCGGCGGCGGCGGCGGAGGAGACGGCGGGACGAGGCGAGTTTGGGTACCGGGACCTGTGATAGTAGGTGCTGGTCCGTCGGGACTAGCGGCGGCGGCGTGTTTGAAACAAAGAGGAGTACCGAGTGTATTACTGGAGAGATCCAACTGTATTGCGTCGTTGTGGCAGTTAAAGACGTATGATCGGCTACGGTTGCATCTACCAAAGCAATTTTGTGAGCTGCCGTTTATGGGTTTTCCGGTGGAATTTCCGACTTATCCTTCTAAGCAACAATTCGTTAAGTATTTGGAGGATTACGCGGAGAGATTTGATATACGGCCGAGATTTAACGAGACGGTTGCGGAAGCGGAGTATGATCGCACGCTCGGGTTTTGGCGCGTGAGGAGCAAACGTGGTCGTTCAGATGAAACAGAGTACGTTTCACGGTGGTTGATCGTGGCTACCGGAGAAAATGCGGAGGCGGTGGTGCCGGAGCTCGACGGAATGGACGTATTTGGTGGCTCAATAAAACATACAAGTTTATACAAAAGCGGTGAAGAGTTTCGAGGGAAAAAAGTTTTGGTTGTTGGCTGTGGAAATTCAGGCATGGAAGTTTGTTTGGATCTTTGTGAACATAGTGCTACACCTTCTCTCGTCGTCAGAGACACAGTTCACGTACTACCACGAGAGATGCTGGGAAAATCGACTTTCGGGTTGTCCATGTGGTTGCTAAAGTGGTTCCCCATACGTCTGGTCGATGGGTTTTTGCTAATGGTGTCGAGGCTGATGCTTGGGGACACTGCCAGATTCGGATTGGACCGGCCCATTATGGGCCCACTTCGTCTCAAAAACTTGTCCGGAAAGACCCCAGTCTTGGATGTTGGTACTCTAGCCAAAATCAAAAGCGGACATATTAAGATACGACCTAGCATCAAGCGGCTGAAACGTCACGCAGTAGAGTTTGTTGATGGAAGAACCGAAAGATTTGATTCCATTATATTGGCTACTGGTTATAGAAGCAATGTGCCCTCTTGGCTAAAGGAGGGAGAAATGTTTGGGAAAGAAGATGGGTTGCCGAGGAGGCCATTTCCAAATGGATGGAAAGGAGAAAGCGGGCTATATGCAGTGGGATTCACAAAACGTGGATTACTTGGCGCATCAATGGATGCCAAAAGAATCGCCGAGGACATCGAACGGTGTTGGAAAGCTGATGCCAAGCTCTGTACTCCCACCATGCAATCTCCACCGTCCACATAG 1302 48.85 MGSYLREIEGKLSNDPFFTEKMSGGGGGGDGGTRRVWVPGPVIVGAGPSGLAAAACLKQRGVPSVLLERSNCIASLWQLKTYDRLRLHLPKQFCELPFMGFPVEFPTYPSKQQFVKYLEDYAERFDIRPRFNETVAEAEYDRTLGFWRVRSKRGRSDETEYVSRWLIVATGENAEAVVPELDGMDVFGGSIKHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCEHSATPSLVVRDTVHVLPREMLGKSTFGLSMWLLKWFPIRLVDGFLLMVSRLMLGDTARFGLDRPIMGPLRLKNLSGKTPVLDVGTLAKIKSGHIKIRPSIKRLKRHAVEFVDGRTERFDSIILATGYRSNVPSWLKEGEMFGKEDGLPRRPFPNGWKGESGLYAVGFTKRGLLGASMDAKRIAEDIERCWKADAKLCTPTMQSPPST 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25874076 25877268 - CcPI632755_08g013940.1 Cco08g1394 185868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1394 433 Pfam Flavin-binding monooxygenase-like 43 358 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cco08g1394 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 163 181 - -
Cco08g1394 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 207 225 - -
Cco08g1394 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 41 60 - -
Cco08g1394 433 SUPERFAMILY FAD/NAD(P)-binding domain 42 243 IPR036188 -
Cco08g1394 433 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 37 420 IPR050982 GO:0004497(PANTHER)|GO:0009851(PANTHER)|GO:0050660(PANTHER)
Cco08g1394 433 SUPERFAMILY FAD/NAD(P)-binding domain 206 417 IPR036188 -
Cco08g1394 433 PRINTS Pyridine nucleotide disulphide reductase class-II signature 203 227 - -
Cco08g1394 433 PRINTS Pyridine nucleotide disulphide reductase class-II signature 40 62 - -
Cco08g1394 433 Gene3D - 41 421 IPR036188 -
Cco08g1394 433 FunFam Flavin-containing monooxygenase 41 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1394 K11816 - - csv:101203913 816.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0949 Cco-Chr6:12669109 Cco08g1394 Cco-Chr8:25874076 1.40E-161 dispersed
Cco07g0152 Cco-Chr7:1592306 Cco08g1394 Cco-Chr8:25874076 1.20E-144 dispersed
Cco08g0433 Cco-Chr8:10395368 Cco08g1394 Cco-Chr8:25874076 2.00E-98 dispersed
Cco08g1394 Cco-Chr8:25874076 Cco08g1459 Cco-Chr8:26447589 3.60E-144 dispersed
Cco08g1394 Cco-Chr8:25874076 Cco05g0431 Cco-Chr5:3517468 2.20E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83