Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1399 ATGGAGGCTGAGAGAATGGAGAAAGAACAGCAGCGGACTACCAGGAAAAGGCCTCGTTCCGCATGGGACGTGGTGCCATCCGAAGAAGAGGCTAATAAGGCTTTGATGGTGGTTAAGAATGATGTCAAAAGGCATGCATCACCCCCGAGAAGAGATGATGATCGTGAAGGACACTATGTCTTTAACCTTGGCGAGAATCTCACTCCGAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGCTGGGACCGTCAAACTCGAGAATATGTAGCCATTAAGGTAGTGCGAAGCATACGCAAATACCGTGATGCAGCCATGGTTGAGGTGGATATACTTAAACATCTTGCTCAGAATGACACAGGCAGCTTACATTGTGTGCAGATTAGAACTTGGTTTGACTACCGTAATCATATATGTATAGTATTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGACCTTGTTCGGGAGTTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATTTACACTTAATCCACACAGACCTGAAGCCAGAAAATATACTTCTTGTGTCTTCTGAATATATAAAGCTTCCTGGTTGTAAGAGGGTTTCGTCCGATGAAACGCAATTCAGATGCTTGCCCAAGTCTAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATGAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATTCTAGGTCTCGGGTGGAGTTACCCATGCGATTTGTGGAGTATTGGTTGCATTCTTGTTGAACTCTGTTCGGGCAAAGCATTGTTCCAAACTCATGAGAACTTGGAGCATTTAGCAATGATGGAGAGGGTGTTGGGACCTCTGCCAGGGCACATGATTCAGAGTGCCGACCAAAACGCAGAAAAATATTTCAAACGAGGGTTGCGTCTAAACTGGCCTGAAGGAGCAGTTTCAAGAGAAAGCATTAGAGCTGTGAAGAAACTTGATCGTTTGAAGGATATGGTTTCACAATATGTGGGTTTCTCCAGGTCTCTATTGACTGATCTGTTGTATGATTTATTGAAATATGACCCTTCAGAACGACCAACAGCTCGACAAGCCCTTAACCATCCCTTCTTTAAGAGTATAGCTTGA 1203 43.23 MEAERMEKEQQRTTRKRPRSAWDVVPSEEEANKALMVVKNDVKRHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMVEVDILKHLAQNDTGSLHCVQIRTWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHDLHLIHTDLKPENILLVSSEYIKLPGCKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNENHSSIVSTRHYRAPEVILGLGWSYPCDLWSIGCILVELCSGKALFQTHENLEHLAMMERVLGPLPGHMIQSADQNAEKYFKRGLRLNWPEGAVSRESIRAVKKLDRLKDMVSQYVGFSRSLLTDLLYDLLKYDPSERPTARQALNHPFFKSIA 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25928228 25932023 + CcPI632755_08g013990.1 Cco08g1399 185873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1399 400 FunFam Serine/threonine-protein kinase AFC2 58 151 - -
Cco08g1399 400 Pfam Protein kinase domain 71 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1399 400 FunFam Serine/threonine-protein kinase AFC2 147 396 - -
Cco08g1399 400 Gene3D Phosphorylase Kinase; domain 1 58 151 - -
Cco08g1399 400 Gene3D Transferase(Phosphotransferase) domain 1 125 396 - -
Cco08g1399 400 SMART serkin_6 71 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1399 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1399 400 MobiDBLite consensus disorder prediction 1 25 - -
Cco08g1399 400 CDD PKc_CLK 58 396 - -
Cco08g1399 400 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 16 398 IPR051175 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)
Cco08g1399 400 ProSiteProfiles Protein kinase domain profile. 71 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1399 400 SUPERFAMILY Protein kinase-like (PK-like) 58 399 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1399 K08287 - - csv:101210171 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0327 Cco-Chr3:3625742 Cco08g1399 Cco-Chr8:25928228 2.30E-150 dispersed
Cco04g1867 Cco-Chr4:33326116 Cco08g1399 Cco-Chr8:25928228 1.60E-38 dispersed
Cco08g1399 Cco-Chr8:25928228 Cco11g0624 Cco-Chr11:6755564 1.70E-39 dispersed
Cco08g1399 Cco-Chr8:25928228 Cco10g2075 Cco-Chr10:34121831 1.20E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g364 . . . . Bpe02g01198 . . . Cmo05g00634 . . Cma05g00608 . . Sed01g1289 . . Bhi04g00814 Tan02g2583 Cmetu03g0841 . Hepe10g0340 . Lcy13g1385 . . . . . . . . . . Cone20ag0616 . . . Cme03g01723 . Blo18g00067 Bda01g00951 . . . Bma01g01330 . . . . . . . Car05g00551 Cpe11g00531 . . . . . . . . Cla08g01240 Cam08g1698 Cec08g1277 Cco08g1399 Clacu08g1394 . Cre08g1180 Lsi08g01102 . Chy03g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009152 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87048 PF00069 Pkinase 1.10E-51 CL0016 Cco PK