Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1411 ATGGACTCCCGCGAATCAAACCTCCCTCTCCTCCTCCAACACTCATACTGCAGATCCAAATCCCTAACCTCCGACGACCTTCGCAACTTCCGAATCAGCCTCAAATGGTGCGCTCTCGACCACTCCTCCCCCGCCGGAAAGTTCTTCTCCTACTTCACCTTCGCTTTCCTGACCTTCGTCGTCCCCGCCGTGACGATCGTCGCCATCCGAGATCCAGCCGACGATCCGATCTCGTTCAATAAACTGGTTCAGGTTCCGGAATCCGGACTGGCGGCGATCGGATTCTTGAGCCTGTGCCGATTCTTCCGGCGGTATGGACTCCGGCAGCTTCTGTTCTTGGAGGGATTGCAAGATGATTCTGTGTATGTGCAGAAAGGGTATGCGCGTGAACTGGAGAAGTGGTTCCGTTACGTTGCTTACATTCTTTTTCCGTCGTTCTTTGTTGAGTTGGCCCACAAGATCATATTCTTCTCCACCGTCAAGATTTCATTTCCGGTAGGGTTTCCAGTGAACTCGATTGTGTTCATATTGGTGTTGGGATCGTGGGTGTACCGAACCGGGGTGTTCTTGCTCGTGTGCGTATTGTTTCGGCTCACGTGCGAGTTGCAAATTCTTAGGCTACAAGGGGTTCACAAGCTGTTCGAAACAAGCAGCGGGTCGGGATCGGACGTGGTGGTCATCTTCAACGAACATTTGAGGATCAGAAAACAATTATCGGTTACGAGCCACCGGTACCGGTTCTTCATAATTGTGTGCTTGCTCGTTATTACGGTTAGCCAGTTCGTTTCGTTGCTCCTGGTTTTGGCCTCTAAAAGTGACAAAAATTTCTTCAACTCCGGCGATGTTGTGGTTTGCTCGGCTGTTCAATTATGCGGATTCTTCTTGTGCTTGTTTGGAGCTGCGAGAATTACTCACCGAGCACAAGCAATCGCATCGGTTGCAACCCGATGGCACATGCTAGTCACCTCCGCCGCCGCCGGATCCAACCCGACCAAATCTCCACCGCTACAGCCGCCTGTTGACGACGAGAAAGACGGTAATGGTAGTGGTGCCGATGATGACGACACCGATTCGGATTCGTCGTCGGACGTTTTAATTTCAGTGAGCACGCAACAACCTTCTTCCTTCCAAACCAGACAAGCTTTAGTATCATATTTGCAACACAACAATGGGGGAATTACACTGTTTGGATATGCATTAGATCGAGGATTGCTTCATACACTCTTCGCATTTGAATTCTCTCTCGTCATGTGGATTTTGAGTAAGACGAAATTCCGACCAGTTTCCGTTTCGTCTCTCTCTCCTTCTCTCCCAATCGGATCAGAGGAATTCTTCCGGTTTTATTCGTCGGAGTTCTTGATTTGTACAATCATGGTTCTTTGGGTTTTTGGCTATGGATCTCTTGTGTGGAATCCAGGATTCGACTTCGATGAGAAAGTGATAGGTTTCATTAGAGATTATAGGCGTGTATTTGATCTTGCTTGTATTGACCATAGAGGTACACCTGAAAATCCTGCTAGAACTCTCACGCTAGAACCCAAAGAAGGATCAATTTGCTGGGGTGCTGCATTTTGCATCCGTGGAGGTCCTGAAAGAGAGAGAGAGGCCATGGAGTATTTGGAGAGGAGAGAGTGCGAGTATGATCAAAAGACTATTATGAACTTCTACGAGGATGAAGACTCCTTGGAACCCACATTGACAGGAGTAGTAGTTTTCACATCTACATTTGATAAAGTGCTAAACAAATACTATCTAGGACCTGCTCCATTGGAGCAAATGGCTAGCCAAATTGCAACTGCATCTGGTCCATGTGGGAACAATAGAGACTATCTATTCCGGTTAGAGAAGGCCTTGTTTGATATCGGCCACGAAGACGATATGGTGATCGAGCTTGCTAATGAAGTGAGGAATATCCTTGGGAAGGTTGGGAAGGGGGTGATTTTGAAGGAGAAGAAGAATCTGATTGGACCGATGACCCACCTGCCATTCATGTCCTTCATCTCAGGTGTTCAGGTGCATCAGCTGGCAGAAACCGCCGCTGTGGCCATGGATTCTTAA 2058 48.15 MDSRESNLPLLLQHSYCRSKSLTSDDLRNFRISLKWCALDHSSPAGKFFSYFTFAFLTFVVPAVTIVAIRDPADDPISFNKLVQVPESGLAAIGFLSLCRFFRRYGLRQLLFLEGLQDDSVYVQKGYARELEKWFRYVAYILFPSFFVELAHKIIFFSTVKISFPVGFPVNSIVFILVLGSWVYRTGVFLLVCVLFRLTCELQILRLQGVHKLFETSSGSGSDVVVIFNEHLRIRKQLSVTSHRYRFFIIVCLLVITVSQFVSLLLVLASKSDKNFFNSGDVVVCSAVQLCGFFLCLFGAARITHRAQAIASVATRWHMLVTSAAAGSNPTKSPPLQPPVDDEKDGNGSGADDDDTDSDSSSDVLISVSTQQPSSFQTRQALVSYLQHNNGGITLFGYALDRGLLHTLFAFEFSLVMWILSKTKFRPVSVSSLSPSLPIGSEEFFRFYSSEFLICTIMVLWVFGYGSLVWNPGFDFDEKVIGFIRDYRRVFDLACIDHRGTPENPARTLTLEPKEGSICWGAAFCIRGGPEREREAMEYLERRECEYDQKTIMNFYEDEDSLEPTLTGVVVFTSTFDKVLNKYYLGPAPLEQMASQIATASGPCGNNRDYLFRLEKALFDIGHEDDMVIELANEVRNILGKVGKGVILKEKKNLIGPMTHLPFMSFISGVQVHQLAETAAVAMDS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26035507 26046059 - CcPI632755_08g014110.1 Cco08g1411 185885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1411 685 CDD GGCT_like 462 552 IPR013024 -
Cco08g1411 685 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 7 423 IPR021924 -
Cco08g1411 685 Pfam Protein of unknown function (DUF3537) 25 411 IPR021924 -
Cco08g1411 685 MobiDBLite consensus disorder prediction 325 363 - -
Cco08g1411 685 Gene3D - 459 622 - -
Cco08g1411 685 FunFam Gamma-glutamylcyclotransferase 459 642 - -
Cco08g1411 685 Pfam ChaC-like protein 460 637 IPR006840 GO:0006751(InterPro)|GO:0061928(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1411 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2902 Cco-Chr5:36562952 Cco08g1411 Cco-Chr8:26035507 3.40E-93 dispersed
Cco08g0693 Cco-Chr8:18433599 Cco08g1411 Cco-Chr8:26035507 1.60E-51 dispersed
Cco08g1411 Cco-Chr8:26035507 Cco09g1104 Cco-Chr9:10611258 5.70E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g243 . . . . . . . . . . . . . . Sed03g1519 . . Bhi04g01112 Tan02g2600 Cmetu03g0813 . Hepe10g0329 . Lcy13g1703 . . . . . . . . . . . . . . Cme03g01709 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01253 Cam08g1710 Cec08g1290 Cco08g1411 Clacu08g1407 . Cre08g1192 Lsi08g01115 Csa02g02306 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011850 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30