Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1414 ATGTGGAGTCAGAAGCAATCAATTGGTGGTAAGGAAAGGAAAGAGCTGGCCACAGGCAATCAATTAGTGGGAATCGCCATTGACAAGGATAAAGGAAGTCAAGTTGCTCTCAAATGGGCCACTGAGAATCTCCTTGTAAAGGGCCAAACTGTCATTCTCATCCACGTTAAACTCCGACCTTCCTCCTATCCTGGCTCTTCTCTCACTACCCCTAAGGTGATGTCGGCATCTGATGCTGGCAGTGGCAATGGAAATGTTATGGTAAGCAAGGATATGGATCCGAACACAAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACGCGTAAAGATATATTTTGCAAAGACATCGTCCTTGAAGATTTAGACGTTGCAAAAGCGTTGATCGAATATGTCACTCAGGCTGGAATTGAGAATTTGGTTGTTGGTGCCACGACTAAAAGTGGCTTCTTGAGAAGATTCAAGACGACAGATATTCCAGGCAGTGTTGTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAAATCCAAACTATGCGATCAGCGTCACGTCCTGCTCCCGCTTCGTCTCCTCTACGAAGTTTATTGCTGAGCCAAGCTGGTATCAAATCACATTCAGCAGAGTCACCAGTTCCTCAGATTCAAAGACCTGAAAAGCCTCCCCTTGAAACAGCACGTAGATCTCAGGACAACATCGAGTTCAGGTCGCCGTTCACTAGGAAAGGCTACAATGGAAAAATGCCAGGGGAAGTCAGTCAGCCAGATACTGATATTTCTTTCGTTAGCTCGGGAAGGCCGAGTGTTGATAGATTATTCCCTACGTTGTATGACAACCTGGATACAGGAAGGGTTCCCCCACGGCTGTCCAGTGGCAACAATGCTGATATATACAATAGCTTCGAGTCACAGCAGTTCGGACGCAAATCATTGGATGTAAACTATCCACCTGAATTTTTATCGGTCTTCTCAGAAGGTGACAGATTGTCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAAATGAGGAGGCTGAAGCTGGAACTAAAGCAAACCATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTAACAGCTAAACAAAAGGCAATAGAGCTTCAGCGATGGAAATCTGAGGAAGAGCGTAGAATAGAGGAGGCAAGACTTGCAGAGGAAGCTGCATTAGCGATGGTTGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATTGAGGCTGCTGAGGCAGCTAAAAGGATCGCTGAGTTGGAAGCACAGAAGAGAATTAACGCGGAAAAGAAAGCATTCAAGGAAGCAGAAGAGAAGAAGAAGGCATTAGATGCTTTGGCAAACAATGATGTCAGGTATCGGAAGTACTCAATTGACGAGATTGAAACTGCTACTGAGTTCTTTTCAGAATCTTTAAAGATTGGAGAGGGAGGTTATGGGCCTGTTTATAAAGGTTATTTGGACCACACACCAGTTGCAATTAAGGTCTTACGTCCGGATGCGGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTTGAAGTACTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTTGGAGCATGCCCCGAATATGGCTGCTTGGTCTATGAGTTCATGGCACATGGTAGCTTGGATGACTGCCTCTTTCGCCGAAGAGAAAACTCAAAACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATTGGCACTGCCTTGTTGTTCCTCCACCAGACTAAGCCTGAGCCTCTTGTGCACCGTGATTTGAAACCGGCCAACATCTTGCTCGATCGTAACTATGTTAGCAAGATTAGCGACGTTGGTTTGGCCAGGCTTGTTCCCCCATCTGTAGCCGACAGTGTGACACAATATAGAATGACTTCAACTGCTGGCACATTCTGTTATATCGATCCCGAGTATCAACAGACGGGCATGCTTGGTGTAAAGTCCGACATATATTCATTGGGAATCATGTTTTTGCAGTTGATTACAGGAAGGGCACCCATGGGATTGACTCACCATGTGGGAAGAGCTATTGAGAAAGGGACTTTGTCGGAAATTCTTGATCCATCTATTACCAATTGGCCAGCTGAGGAAACGTTATGCTTTGCGGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGACCGACCTGATCTCGGTAAGGTTGTTCTCCCAGAACTCATCAGATTTCAATCGCTAGCCGAAGCCAGCATGTACACACCGGTGACGGACGGTGTTAGCAGCCCTGTGTTCAGCCACAGCCAGGTTCCTATGAGAAAAGACGGCGAATGTTTTTCCTCACAATCTAGCGATAGCCATGGAGTCTTATCGCGCTCGGCGTCGTAG 2379 46.24 MWSQKQSIGGKERKELATGNQLVGIAIDKDKGSQVALKWATENLLVKGQTVILIHVKLRPSSYPGSSLTTPKVMSASDAGSGNGNVMVSKDMDPNTRDLFLPFRCFCTRKDIFCKDIVLEDLDVAKALIEYVTQAGIENLVVGATTKSGFLRRFKTTDIPGSVVKGAPDFCNVYVISRGKIQTMRSASRPAPASSPLRSLLLSQAGIKSHSAESPVPQIQRPEKPPLETARRSQDNIEFRSPFTRKGYNGKMPGEVSQPDTDISFVSSGRPSVDRLFPTLYDNLDTGRVPPRLSSGNNADIYNSFESQQFGRKSLDVNYPPEFLSVFSEGDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALAMVEQEKAKSRAAIEAAEAAKRIAELEAQKRINAEKKAFKEAEEKKKALDALANNDVRYRKYSIDEIETATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMAHGSLDDCLFRRRENSKPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITGRAPMGLTHHVGRAIEKGTLSEILDPSITNWPAEETLCFAELALKCAELRRKDRPDLGKVVLPELIRFQSLAEASMYTPVTDGVSSPVFSHSQVPMRKDGECFSSQSSDSHGVLSRSAS 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26072767 26077732 + CcPI632755_08g014140.1 Cco08g1414 185888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1414 792 ProSiteProfiles Protein kinase domain profile. 474 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1414 792 Gene3D HUPs 21 176 IPR014729 -
Cco08g1414 792 Pfam Protein kinase domain 477 729 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1414 792 CDD STK_N 22 179 - -
Cco08g1414 792 SUPERFAMILY Protein kinase-like (PK-like) 458 734 IPR011009 -
Cco08g1414 792 MobiDBLite consensus disorder prediction 209 233 - -
Cco08g1414 792 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 446 546 - -
Cco08g1414 792 Gene3D Transferase(Phosphotransferase) domain 1 547 748 - -
Cco08g1414 792 Pfam Universal stress protein family 23 165 IPR006016 -
Cco08g1414 792 Coils Coil 333 360 - -
Cco08g1414 792 Coils Coil 400 455 - -
Cco08g1414 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1414 792 Gene3D Phosphorylase Kinase; domain 1 452 546 - -
Cco08g1414 792 MobiDBLite consensus disorder prediction 773 792 - -
Cco08g1414 792 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 25 168 - -
Cco08g1414 792 PANTHER OS02G0152300 PROTEIN 25 765 IPR051348 -
Cco08g1414 792 SMART serkin_6 474 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1414 Cco-Chr8:26072767 Cco09g0075 Cco-Chr9:649760 1.80E-173 dispersed
Cco02g0480 Cco-Chr2:4357930 Cco08g1414 Cco-Chr8:26072767 2.80E-235 transposed
Cco05g2905 Cco-Chr5:36584538 Cco08g1414 Cco-Chr8:26072767 5.80E-294 transposed
Cco08g1154 Cco-Chr8:23362529 Cco08g1414 Cco-Chr8:26072767 1.30E-197 transposed
Cco11g1155 Cco-Chr11:22585727 Cco08g1414 Cco-Chr8:26072767 2.30E-216 transposed
Cco05g2022 Cco-Chr5:29324219 Cco08g1414 Cco-Chr8:26072767 5.40E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87050 PF00069 Pkinase 2.50E-39 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1414 - - - 0.0