Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1418 ATGACGGCACCGGTGTCAGTTGATGGGAAAATGAAGAAGAATCTTGAGAATTTGGTGTCTGCTACTAAGTCTTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGGCAAAGATTGCCAACTTTAGAAGCGGCGGTTCGGCCTATCCGTGCTGATAAGGAAGCCCTTGCCGCCGTCGGTGGCCATATACATCGGGCTGTTGGCCCTGCGGCGGCGGTGCTCAAGGTTTTTGATGCTGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGATATTTGTCGGTGTTGAAACGGATGGAAGAGGCATTGAGGTTTTTAGGAGATAACTCTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTAGAAGATAATACTGTTGCTGATGAGAAGTATCTAGCGAGTTTGAAGAATTCGTTGAAAAATCTTAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACGGAGCATAGTGTACCCCTTCCCATGTCTTCTTCGGCGTCTCTCGGTGAACAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTAATTCAGAAATTGCAAGCCATTCTTGGGAGATTGATTGCTAATAAACGACTCGAGAGATGCATATCGATTTATGTTGAAGTTCGTAGTTCTAATGTCCGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCAGGTATACTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGCGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTACAGCCGAGATTTTCTGGGAGCTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCCAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGGCCGATCCTGACCCAAGCCCTTGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTGTCAATGAGGTAACAAACCTTGTTAAAGCCATTGAGCAGAATCTCGAGACTTGGATCAAGGCTTATGAAGATTCTACCTTGTCAAATTTTTTCGCTATGAATAATCATTGGCATCTATACAAGCACCTCAAAGGAACGAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACATGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGCAAACTTCCTAGCCATTTAAGCAGGGAGGGTTTGATTATGTTTTCAGGTGGGAGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAACCTGGGTTATATTTGACAAAGAATTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTGCCTGTTTATCGCAGTTACATGCAGAATTACGGCCCCCTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGCAAAGTACACCGTGCAGAATCTGGAGAAAATGTTGCTGTCCCTATATCAGCCAAAGCCACTCAGGTACAGTAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAATGGATCATCGTCGTTCCAACTCCATGGTTTTGTAA 2049 43.97 MTAPVSVDGKMKKNLENLVSATKSLKASLEKSRALGFALQKAGPRLEEIRQRLPTLEAAVRPIRADKEALAAVGGHIHRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNSGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGTAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVNEVTNLVKAIEQNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSTWVIFDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRYSSLKVRQTSGKFSNGAMDHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26099475 26101523 + CcPI632755_08g014180.1 Cco08g1418 185892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1418 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Cco08g1418 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 649 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cco08g1418 682 Pfam Exocyst complex component Exo70 N-terminal 82 199 - -
Cco08g1418 682 Coils Coil 12 32 - -
Cco08g1418 682 Coils Coil 155 175 - -
Cco08g1418 682 Gene3D Exocyst complex component Exo70 137 654 - -
Cco08g1418 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Cco08g1418 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1710 Cco-Chr7:31087317 Cco08g1418 Cco-Chr8:26099475 2.80E-34 dispersed
Cco08g1418 Cco-Chr8:26099475 Cco09g0153 Cco-Chr9:1371655 1.40E-179 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1418 K07195 - csv:101207478 1280.77