Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1428 | ATGGCCGGCAATCATAAGGCCATCACTCTCGAGGAGATTAAAAACGAAGCCGTTGATCTGGAACATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACACGAGAAGGTCTGACATCAGAGGAAGGAGCCCATCGGCTTCAAGTTTTTGGTCCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCTTGGGTAATGGAAGCTGCTGCCTTAATGGCTATAGTCCTGGCAAATGGTGGTGGAAGACCACCAGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATTAGTTTTATTGAAGAAAACAACGCTGGTAACGCGGCTGCAGCACTCATGGCTGGTCTTGCTCCTAAAACTAAGGTTCTAAGAGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCGGGAGATATCATAAGCATTAAGCTTGGAGATATAATACCAGCAGATGCCCGTCTTCTGGAGGGCGATCCTTTAAAAATTGATCAATCTGCTTTAACTGGAGAATCGCTCCCAGTCACCAAGAACCCCTCAGACGAAGTGTTTTCTGGCTCTACATGTAAACAAGGTGAAATTGAAGCAGTTGTGATTGCCACTGGTGTGCACACATTTTTTGGCAAAGCAGCTCACTTGGTAGATAGCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCAATCGCTGTTGGAATACTAATCGAGCTTATAGTTATGTACCCAATACAACGACGCAAGTATAGAGATGGAATTGACAACTTGCTAGTGCTTTTGATTGGTGGAATTCCTATTGCCATGCCAACCGTTTTGTCTGTCACCATGGCCATTGGTTCTCATAGGCTCTCTCAGCAGGGTGCCATTACGAAGAGAATGACAGCCATTGAGGAAATGGCTGGCATGGATGTCCTCTGCAGTGATAAGACGGGAACTCTGACCTTGAACAAGCTAACTGTGGATAGAAGCTTGATCGAAGTGTTTGTCAAGGGTGTCGAGAAAGAGTATGTTATTCTTCTTGCGGCTAGGGCTTCTAGAACGGAGAATCAAGATGCCATTGATGCAGCTATAGTAGGAATGCTTGCGGATCCTAAAGAGGCACGAGCAGGAATTAGAGAGGTTCATTTCCTTCCATTCAATCCTGTTGACAAAAGAACTGCCCTTACTTATATCGACTCTAATGGAATTTGGCACCGAGTAAGCAAAGGTGCTCCTGAGCAGATCCTGAATCTTTGCAACTCTAGGGAAGACGTTAGAAGAAAGGTTCATGCAGTGATTGACAAGTTTGCAGAGCGTGGACTTCGTTCATTGGGCGTTGCAAGACAGGAAGTACCTGAAAAAACAAAAGACAGCCCGGGAGGACCGTGGCAGCTTGTTGGTTTGTTGCCTCTGTTTGATCCTCCTAGGCACGATAGTGCAGAAACCATAAGAAGAGCTCTAAACCTTGGAGTAAATGTGAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACCGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCTTCATCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTCCCAGAACACAAATATGAAATTGTGAAAAGGCTGCAGGAAAGGAAACATATATGTGGAATGACTGGTGATGGTGTTAATGATGCTCCTGCTTTAAAGAAGGCAGATATTGGAATTGCTGTTGCGGATGCTACTGATGCTGCTAGAGGTGCTTCAGATATTGTCCTTACAGAACCAGGATTGAGTGTCATTATTAGTGCGGTGCTAACCAGTAGGGCTATTTTTCAGAGAATGAAGAATTACACGATTTATGCCGTTTCAATTACCATTCGTATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAAGTTTGACTTTGCTCCCTTTATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGCATTGTGCTTGGAGGATACATGGCACTAATGACAGTGTTATTTTTTTGGGCTGTGAAAGATACCAACTTTTTCTCCGAAAAATTTAATGTGAAACCCTTGAAGGATAGTCCTCAAGAATTGATGGCAGCCTTGTACCTACAAGTCAGCATAATAAGTCAGGCACTTATCTTTGTCACGAGGTCGCGCAGCTGGTCATACTTGGAACGTCCTGGACTCCTCCTAGTCGGCGCTTTCATCATTGCTCAGCTGGTGGCAACAGTGATAGCTGTTTATGCAAACTGGGGTTTTGCAAGGATCAAAGGAATGGGATGGGGTTGGGCTGGTGTTATCTGGCTGTACAGCTTGGTAACATACATCCCTCTCGACATTTTGAAATTTGGAATCCGATATGCCCACAGTGGAAAGGCTTGGGACACTCTTCTGGAGAACAAGACTGCGTTCACAACGAAAAAGGATTATGGAAAAGAAGAGAGAGAAGCACAATGGGCAGCTGCACAGAGGACTCTACATGGTCTTCAACCACCGGAAAACTCCAATCTCTTCCCTGAGAAAAGTAGTTATAGGGAACTTTCCGAGATTGCTGAGCAAGCCAAACGCCGCGCTGAGGTTGCAAGGCTCCGAGAATTGCATACACTAAAGGGACATGTTGAATCAGTAGTAAAGCTGAAGGGATTGGACATTGATACAATCCAACAACACTACACAGTTTAA | 2868 | 43.76 | MAGNHKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGIWHRVSKGAPEQILNLCNSREDVRRKVHAVIDKFAERGLRSLGVARQEVPEKTKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYMALMTVLFFWAVKDTNFFSEKFNVKPLKDSPQELMAALYLQVSIISQALIFVTRSRSWSYLERPGLLLVGAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV | 955 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26172280 | 26181655 | - | CcPI632755_08g014280.1 | Cco08g1428 | 185902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1428 | 955 | PRINTS | H+-transporting ATPase (proton pump) signature | 564 | 580 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | PRINTS | H+-transporting ATPase (proton pump) signature | 592 | 608 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | PRINTS | H+-transporting ATPase (proton pump) signature | 764 | 785 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | PRINTS | H+-transporting ATPase (proton pump) signature | 623 | 648 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | PRINTS | H+-transporting ATPase (proton pump) signature | 449 | 467 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | Pfam | haloacid dehalogenase-like hydrolase | 329 | 606 | - | - | |
| Cco08g1428 | 955 | PRINTS | P-type cation-transporting ATPase superfamily signature | 592 | 611 | - | - | |
| Cco08g1428 | 955 | PRINTS | P-type cation-transporting ATPase superfamily signature | 615 | 627 | - | - | |
| Cco08g1428 | 955 | PRINTS | P-type cation-transporting ATPase superfamily signature | 487 | 498 | - | - | |
| Cco08g1428 | 955 | PRINTS | P-type cation-transporting ATPase superfamily signature | 509 | 519 | - | - | |
| Cco08g1428 | 955 | PRINTS | P-type cation-transporting ATPase superfamily signature | 333 | 347 | - | - | |
| Cco08g1428 | 955 | PRINTS | P-type cation-transporting ATPase superfamily signature | 183 | 197 | - | - | |
| Cco08g1428 | 955 | SFLD | Haloacid Dehalogenase | 315 | 643 | - | - | |
| Cco08g1428 | 955 | Gene3D | - | 904 | 955 | - | - | |
| Cco08g1428 | 955 | Gene3D | - | 345 | 492 | IPR023299 | GO:0000166(InterPro) | |
| Cco08g1428 | 955 | FunFam | Plasma membrane ATPase | 485 | 640 | - | - | |
| Cco08g1428 | 955 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 19 | 851 | IPR023298 | - | |
| Cco08g1428 | 955 | Gene3D | - | 136 | 220 | - | - | |
| Cco08g1428 | 955 | SMART | Cation_ATPase_N_a_2 | 19 | 91 | IPR004014 | - | |
| Cco08g1428 | 955 | Pfam | E1-E2 ATPase | 135 | 312 | - | - | |
| Cco08g1428 | 955 | FunFam | ATPase 4 plasma membrane-type | 577 | 819 | - | - | |
| Cco08g1428 | 955 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 38 | 810 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cco08g1428 | 955 | NCBIfam | HAD-IC family P-type ATPase | 567 | 682 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | NCBIfam | HAD-IC family P-type ATPase | 105 | 352 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1428 | 955 | Coils | Coil | 906 | 926 | - | - | |
| Cco08g1428 | 955 | Pfam | Cation transporter/ATPase, N-terminus | 22 | 85 | IPR004014 | - | |
| Cco08g1428 | 955 | Gene3D | - | 98 | 819 | - | - | |
| Cco08g1428 | 955 | SUPERFAMILY | Calcium ATPase, transduction domain A | 136 | 233 | IPR008250 | - | |
| Cco08g1428 | 955 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 21 | 879 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cco08g1428 | 955 | FunFam | Plasma membrane ATPase | 345 | 492 | - | - | |
| Cco08g1428 | 955 | FunFam | Plasma membrane ATPase | 136 | 220 | - | - | |
| Cco08g1428 | 955 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 335 | 341 | IPR018303 | - | |
| Cco08g1428 | 955 | SUPERFAMILY | HAD-like | 329 | 639 | IPR036412 | - | |
| Cco08g1428 | 955 | CDD | P-type_ATPase_H | 38 | 845 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cco08g1428 | 955 | Gene3D | - | 330 | 629 | IPR023214 | - | |
| Cco08g1428 | 955 | SFLD | p-type atpase | 315 | 643 | IPR044492 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1544 | Cco-Chr6:25960637 | Cco08g1428 | Cco-Chr8:26172280 | 0.00E+00 | dispersed | |
| Cco06g1846 | Cco-Chr6:28719686 | Cco08g1428 | Cco-Chr8:26172280 | 0.00E+00 | dispersed | |
| Cco07g1321 | Cco-Chr7:27289592 | Cco08g1428 | Cco-Chr8:26172280 | 0.00E+00 | dispersed | |
| Cco08g1428 | Cco-Chr8:26172280 | Cco11g1233 | Cco-Chr11:24483315 | 0.00E+00 | dispersed | |
| Cco05g1993 | Cco-Chr5:29055313 | Cco08g1428 | Cco-Chr8:26172280 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1428 | K01535 | - | csv:101213505 | 1818.51 |