Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1428 ATGGCCGGCAATCATAAGGCCATCACTCTCGAGGAGATTAAAAACGAAGCCGTTGATCTGGAACATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACACGAGAAGGTCTGACATCAGAGGAAGGAGCCCATCGGCTTCAAGTTTTTGGTCCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCTTGGGTAATGGAAGCTGCTGCCTTAATGGCTATAGTCCTGGCAAATGGTGGTGGAAGACCACCAGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATTAGTTTTATTGAAGAAAACAACGCTGGTAACGCGGCTGCAGCACTCATGGCTGGTCTTGCTCCTAAAACTAAGGTTCTAAGAGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCGGGAGATATCATAAGCATTAAGCTTGGAGATATAATACCAGCAGATGCCCGTCTTCTGGAGGGCGATCCTTTAAAAATTGATCAATCTGCTTTAACTGGAGAATCGCTCCCAGTCACCAAGAACCCCTCAGACGAAGTGTTTTCTGGCTCTACATGTAAACAAGGTGAAATTGAAGCAGTTGTGATTGCCACTGGTGTGCACACATTTTTTGGCAAAGCAGCTCACTTGGTAGATAGCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCAATCGCTGTTGGAATACTAATCGAGCTTATAGTTATGTACCCAATACAACGACGCAAGTATAGAGATGGAATTGACAACTTGCTAGTGCTTTTGATTGGTGGAATTCCTATTGCCATGCCAACCGTTTTGTCTGTCACCATGGCCATTGGTTCTCATAGGCTCTCTCAGCAGGGTGCCATTACGAAGAGAATGACAGCCATTGAGGAAATGGCTGGCATGGATGTCCTCTGCAGTGATAAGACGGGAACTCTGACCTTGAACAAGCTAACTGTGGATAGAAGCTTGATCGAAGTGTTTGTCAAGGGTGTCGAGAAAGAGTATGTTATTCTTCTTGCGGCTAGGGCTTCTAGAACGGAGAATCAAGATGCCATTGATGCAGCTATAGTAGGAATGCTTGCGGATCCTAAAGAGGCACGAGCAGGAATTAGAGAGGTTCATTTCCTTCCATTCAATCCTGTTGACAAAAGAACTGCCCTTACTTATATCGACTCTAATGGAATTTGGCACCGAGTAAGCAAAGGTGCTCCTGAGCAGATCCTGAATCTTTGCAACTCTAGGGAAGACGTTAGAAGAAAGGTTCATGCAGTGATTGACAAGTTTGCAGAGCGTGGACTTCGTTCATTGGGCGTTGCAAGACAGGAAGTACCTGAAAAAACAAAAGACAGCCCGGGAGGACCGTGGCAGCTTGTTGGTTTGTTGCCTCTGTTTGATCCTCCTAGGCACGATAGTGCAGAAACCATAAGAAGAGCTCTAAACCTTGGAGTAAATGTGAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACCGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCTTCATCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTCCCAGAACACAAATATGAAATTGTGAAAAGGCTGCAGGAAAGGAAACATATATGTGGAATGACTGGTGATGGTGTTAATGATGCTCCTGCTTTAAAGAAGGCAGATATTGGAATTGCTGTTGCGGATGCTACTGATGCTGCTAGAGGTGCTTCAGATATTGTCCTTACAGAACCAGGATTGAGTGTCATTATTAGTGCGGTGCTAACCAGTAGGGCTATTTTTCAGAGAATGAAGAATTACACGATTTATGCCGTTTCAATTACCATTCGTATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAAGTTTGACTTTGCTCCCTTTATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGCATTGTGCTTGGAGGATACATGGCACTAATGACAGTGTTATTTTTTTGGGCTGTGAAAGATACCAACTTTTTCTCCGAAAAATTTAATGTGAAACCCTTGAAGGATAGTCCTCAAGAATTGATGGCAGCCTTGTACCTACAAGTCAGCATAATAAGTCAGGCACTTATCTTTGTCACGAGGTCGCGCAGCTGGTCATACTTGGAACGTCCTGGACTCCTCCTAGTCGGCGCTTTCATCATTGCTCAGCTGGTGGCAACAGTGATAGCTGTTTATGCAAACTGGGGTTTTGCAAGGATCAAAGGAATGGGATGGGGTTGGGCTGGTGTTATCTGGCTGTACAGCTTGGTAACATACATCCCTCTCGACATTTTGAAATTTGGAATCCGATATGCCCACAGTGGAAAGGCTTGGGACACTCTTCTGGAGAACAAGACTGCGTTCACAACGAAAAAGGATTATGGAAAAGAAGAGAGAGAAGCACAATGGGCAGCTGCACAGAGGACTCTACATGGTCTTCAACCACCGGAAAACTCCAATCTCTTCCCTGAGAAAAGTAGTTATAGGGAACTTTCCGAGATTGCTGAGCAAGCCAAACGCCGCGCTGAGGTTGCAAGGCTCCGAGAATTGCATACACTAAAGGGACATGTTGAATCAGTAGTAAAGCTGAAGGGATTGGACATTGATACAATCCAACAACACTACACAGTTTAA 2868 43.76 MAGNHKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGIWHRVSKGAPEQILNLCNSREDVRRKVHAVIDKFAERGLRSLGVARQEVPEKTKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYMALMTVLFFWAVKDTNFFSEKFNVKPLKDSPQELMAALYLQVSIISQALIFVTRSRSWSYLERPGLLLVGAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 955
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26172280 26181655 - CcPI632755_08g014280.1 Cco08g1428 185902
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1428 955 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 PRINTS H+-transporting ATPase (proton pump) signature 764 785 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Cco08g1428 955 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Cco08g1428 955 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Cco08g1428 955 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Cco08g1428 955 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Cco08g1428 955 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Cco08g1428 955 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Cco08g1428 955 SFLD Haloacid Dehalogenase 315 643 - -
Cco08g1428 955 Gene3D - 904 955 - -
Cco08g1428 955 Gene3D - 345 492 IPR023299 GO:0000166(InterPro)
Cco08g1428 955 FunFam Plasma membrane ATPase 485 640 - -
Cco08g1428 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 851 IPR023298 -
Cco08g1428 955 Gene3D - 136 220 - -
Cco08g1428 955 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Cco08g1428 955 Pfam E1-E2 ATPase 135 312 - -
Cco08g1428 955 FunFam ATPase 4 plasma membrane-type 577 819 - -
Cco08g1428 955 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 810 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco08g1428 955 NCBIfam HAD-IC family P-type ATPase 567 682 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 NCBIfam HAD-IC family P-type ATPase 105 352 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1428 955 Coils Coil 906 926 - -
Cco08g1428 955 Pfam Cation transporter/ATPase, N-terminus 22 85 IPR004014 -
Cco08g1428 955 Gene3D - 98 819 - -
Cco08g1428 955 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Cco08g1428 955 PANTHER CALCIUM-TRANSPORTING ATPASE 21 879 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cco08g1428 955 FunFam Plasma membrane ATPase 345 492 - -
Cco08g1428 955 FunFam Plasma membrane ATPase 136 220 - -
Cco08g1428 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Cco08g1428 955 SUPERFAMILY HAD-like 329 639 IPR036412 -
Cco08g1428 955 CDD P-type_ATPase_H 38 845 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco08g1428 955 Gene3D - 330 629 IPR023214 -
Cco08g1428 955 SFLD p-type atpase 315 643 IPR044492 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1544 Cco-Chr6:25960637 Cco08g1428 Cco-Chr8:26172280 0.00E+00 dispersed
Cco06g1846 Cco-Chr6:28719686 Cco08g1428 Cco-Chr8:26172280 0.00E+00 dispersed
Cco07g1321 Cco-Chr7:27289592 Cco08g1428 Cco-Chr8:26172280 0.00E+00 dispersed
Cco08g1428 Cco-Chr8:26172280 Cco11g1233 Cco-Chr11:24483315 0.00E+00 dispersed
Cco05g1993 Cco-Chr5:29055313 Cco08g1428 Cco-Chr8:26172280 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1428 K01535 - csv:101213505 1818.51