Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1446 ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCCGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCTGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTAAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCAGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCATCTACATCTTTTTCCAAAACATCTCCTGGTTGGCATGTAGTAGATGATAGTGGGATATCTGCAAAATATAATATGTGGTTTTTGTTGCTTGCAAATGCGCCATCTGCTGAATTGGCTCATGAACTTTATGATATACCCCAAATTACTGAACTGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGATGAGAATATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAGTATCTAAGCAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCATGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAATGCATCGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAAGAGCACTCTTTATCGGTCTCCAGAAGGATGGAATGCCTTAAATGATAGATGTAAAGAAAGAATCCATATCAAGAGCCATCTCATTAGGAACTTGGAAGTGGATATTTTAACATGGTTGATGATCGCACTAAATAGTTTCTCCTTTAATGTTTGGAGGGTCCTGTTTTGA 1371 41.28 MAVKTAQSFRDRTPEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGWHVVDDSGISAKYNMWFLLLANAPSAELAHELYDIPQITELKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLSSISSNRRKIWILVKYNVDNVSVHVYAFNFSSNFGNASLKNSNASNYYSLKSTLYRSPEGWNALNDRCKERIHIKSHLIRNLEVDILTWLMIALNSFSFNVWRVLF 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26335914 26340764 + CcPI632755_08g014460.1 Cco08g1446 185920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1446 456 MobiDBLite consensus disorder prediction 170 190 - -
Cco08g1446 456 ProSitePatterns Syntaxin / epimorphin family signature. 293 332 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco08g1446 456 MobiDBLite consensus disorder prediction 1 46 - -
Cco08g1446 456 MobiDBLite consensus disorder prediction 10 46 - -
Cco08g1446 456 PANTHER SYNTAXIN 54 363 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco08g1446 456 Gene3D - 50 342 - -
Cco08g1446 456 SUPERFAMILY t-snare proteins 52 342 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco08g1446 456 Pfam SNARE domain 323 364 IPR000727 -
Cco08g1446 456 MobiDBLite consensus disorder prediction 168 217 - -
Cco08g1446 456 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Cco08g1446 456 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 287 349 IPR000727 -
Cco08g1446 456 SMART tSNARE_6 282 349 IPR000727 -
Cco08g1446 456 CDD SNARE_syntaxin5 290 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0418 Cco-Chr7:4580685 Cco08g1446 Cco-Chr8:26335914 1.50E-69 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1446 K08490 - csv:101203633 508.449