Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1449 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTGTTACCCTTTATTAATGGCACGGCCTGAAAATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAGTTCAAATGGCTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACCCGAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATCCTCTTCAATCCAGCCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCCGCATCCTGCCCCATCTGCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTATTGGTGGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGGGGAGCCACATCAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGGGATGATAGAGAAAACAACTCCGGGGCTGGAGATGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCACACTTTTTCCACAAGGACTGTGTAGATAAATGGTTGAAGATCAATGCCCTGTGCCCGCTTTGCAAAACCGAGGTTGGCGAGAGTATCATCAACTCTCTTGAGGGGACAAACAGACAACAACAGGGTGATTAG 1278 44.05 MDVPSVELNCESEGDCYPLLMARPENSNSSEHIIDITGTGDSAPSSLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDPLQSSQNSSRINVPAGPFSLSVSRASEGEELPHPAPSARGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGDGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIINSLEGTNRQQQGD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26351315 26354457 - CcPI632755_08g014490.1 Cco08g1449 185923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1449 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Cco08g1449 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cco08g1449 425 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Cco08g1449 425 FunFam E3 ubiquitin-protein ligase 346 412 - -
Cco08g1449 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cco08g1449 425 MobiDBLite consensus disorder prediction 31 90 - -
Cco08g1449 425 Pfam Ring finger domain 363 404 IPR001841 -
Cco08g1449 425 MobiDBLite consensus disorder prediction 31 96 - -
Cco08g1449 425 SUPERFAMILY RING/U-box 355 410 - -
Cco08g1449 425 SMART ring_2 363 403 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1449 Cco-Chr8:26351315 Cco09g2351 Cco-Chr9:37671971 8.40E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1449 - - - 0.0