Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1451 ATGATAGCAAAGGAGCGGAGGTTGTTGTTTGTAGGCTCCTTCAAAGTTGGCGACTCGTTCAAAAAAACTCCATCTCCTTCCCGCTCCTTCTCCCCGCTCCTCCGCCCTGTTCCTCACCCGCTAGCTCCGCCGCCTATGCCCGCCGTCCCATTCCATTTTTATGCACTCAAAGCTATGACCGACTGGCTGATCCGAGAAGATGTTGGAATGGAGCTTCCAGTGAATGCTAAGTGTAAAGTCATTTCGGTTTTGTTCAATAGCATAAAGATCGGCGTAACATGGTTCTGTATCAACATGCACATATCTGAGCTCAATTCCTTTTCATATGGGTACAGATGCAGTTTTCATTTCACATTGCTAGCAAAATTCTCTTTACGAGTTCAAATGCCAAGTTATAGCCGTGCATTTGCTTGTCCACACACAACAGCTCTGTTGAATATGATGAAAGAAAAGGTTGCTGTCAGAATCACGCGCCCCCAGTCTAATTCCTCAAGCAGACTGGGAGCTAATTCACCCTCATTGCAACTTTCACTCAAAGAATTGCGCAAACGTGGCCATACAGAAGACTCTGAACGAGCACAACTAGATGGAAGTAATGCTTCCACAACTATTATTGTTGGTGTTCGGCGCAAAAGAAGATCAGTGCTCAAGGATGTTACCAACATATCCTGTGAGAGTAGTAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATTGAATCACTTGAAGATTCACCCGTTAAAAGGATGGCAGAATCACTAGGTACCTCTCCAGTGATGAGGTCAGACAAACAAGAGACAACACAGGCGAACAAGTTTCAGAGTGTCATAGGATGCAAAAATTGTGCGTTCCCCATGCCTTCAGGATCAAACGACCACCAAATGAAAGTTGAGGCTACGGTTTGTGAGAAATTAAACCATCTCGGTAGTTTGGATGCTATTTCAAACTCAGAAGATCCTCAAGCTTGCACCCTATATGCCCATAATATATATGATACTAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACCGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTCACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACAGACAACGCCTATGCGCGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTGCAAGGAAACTTGTGTCGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGATTTCTGCCTTCAGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGCATCAACCAAATCAACCATGGAACCTGGCTTTAGAGCACTATACCAATTACAATGTCTCCAAGTTAAGAACTTCAGTACTTGCCTTGGAAGATCTAAGATTGAACTCCACAGGCTGCCCTTTAAACGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCCAACCAGACAGATACCTGA 1803 43.21 MIAKERRLLFVGSFKVGDSFKKTPSPSRSFSPLLRPVPHPLAPPPMPAVPFHFYALKAMTDWLIREDVGMELPVNAKCKVISVLFNSIKIGVTWFCINMHISELNSFSYGYRCSFHFTLLAKFSLRVQMPSYSRAFACPHTTALLNMMKEKVAVRITRPQSNSSSRLGANSPSLQLSLKELRKRGHTEDSERAQLDGSNASTTIIVGVRRKRRSVLKDVTNISCESSNLGCLHASKVQVQEVSQIESLEDSPVKRMAESLGTSPVMRSDKQETTQANKFQSVIGCKNCAFPMPSGSNDHQMKVEATVCEKLNHLGSLDAISNSEDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCCITDNAYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASCKETCVEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNLALEHYTNYNVSKLRTSVLALEDLRLNSTGCPLNAVFQKYRQQKFGSVATLTSTKSVLSAFPNQTDT 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26366876 26377879 - CcPI632755_08g014510.1 Cco08g1451 185925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1451 600 FunFam Cyclin A1 451 583 - -
Cco08g1451 600 SUPERFAMILY Cyclin-like 324 461 IPR036915 -
Cco08g1451 600 PANTHER CYCLINS 318 574 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco08g1451 600 SMART cyclin_7 371 455 IPR013763 -
Cco08g1451 600 SMART cyclin_7 468 556 IPR013763 -
Cco08g1451 600 Gene3D - 336 583 - -
Cco08g1451 600 SUPERFAMILY Cyclin-like 463 588 IPR036915 -
Cco08g1451 600 Gene3D - 349 462 - -
Cco08g1451 600 FunFam Mitotic cyclin 6 349 449 - -
Cco08g1451 600 Pfam Cyclin, C-terminal domain 464 585 IPR004367 -
Cco08g1451 600 Pfam Cyclin, N-terminal domain 336 462 IPR006671 -
Cco08g1451 600 ProSitePatterns Cyclins signature. 366 397 IPR048258 -
Cco08g1451 600 SMART Cyclin_C_2 464 587 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1451 Cco-Chr8:26366876 Cco08g1812 Cco-Chr8:29187366 1.40E-66 dispersed
Cco05g1952 Cco-Chr5:28578342 Cco08g1451 Cco-Chr8:26366876 1.70E-110 wgd
Cco08g1451 Cco-Chr8:26366876 Cco09g0233 Cco-Chr9:2091187 4.90E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1451 K06627 - csv:101211578 773.081