Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1458 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTTTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAAACACAGCCACAACAACAGCAACCACAACACATGCAGATGCTTTTAATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAACAACAACAACAGCATCAACAGCAACAACAGCCACAGCAGCAGCAACAACAGACTCAGCAACAACAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGAAATTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGTCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTACCTCTTCAGAGGGATTCTCTAGATGATGCGGCTATGAAACAAAGGTATGGAGAAAACGTTGGGCAGCTGTTGGACCCAAATCATGCATCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTGCAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGCGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACCGGGCTAGAGCAACTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTTCTCAATCATTTCCTCAGCTTCATCAGATGTTGACACCACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTACTGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGATAGCACAGAAATGATTATTAAGATAAAAATGGCTCAAATGCATCAACAGCAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCATGCTCTTTCTAATCAACAGTCGCAAAGCTCAAACCACAATATGCCTCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCTTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGGCTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACCCATACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGCACTTTTACATCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTCGTTGAGGATGGGTCTCTTGATGACAACGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTGGGGCGCTGCATGGACGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTTCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCTAGTGGTGGCCAGGATAAGAAGGCTGTATTATGGTACACAGACAATTTAAAGCCGAAAACTTCACTTGAAGAACATACTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGGCTTGCAACTTCATCATTCGATCGAACAGTCAGAGTGTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTACGTCTTTGGACTTCCATCCGAAGAAGGACGACTTTATTTGCTCTTGTGATAGTGATGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTATGGGCCAGATGAGATTTCAACCTCGTCTTGGGAGATACTTTGCTGCTTCTGTAGATAATATCGTATCCATTTTTGATGTCGAGACACAAGCACGTCTGCATTCATTACAGGGACACACCCAAAAGGTTCAGTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCTGTTCGAGTGTGGACGCTTGCTTCGGGGAATGAGGGCGAATCCATTCACGAGTTGAGCTGTAACGGCAATAAATTCCACTCTTGTGTTTTCCATCCCACCTATTCTACTTTGCTGGTCATTGGATGCTACCAGTCATTAGAGCTTTGGAACACGACTGAGAACAAGACGATGACTCTATCAGCTCATGAAGCTTTAATATCTTCCTTAGCAGTGTCCACGGCATCGGGTCTAGTTGCTTCGGCCAGCCACGACAAGTTCGTCAAACTGTGGAAGTAA 2694 45.03 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGNSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGAAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQASQSFPQLHQMLTPQHQQQLMLAQQNLTSPSVTDDGRRLRMLLNSRMAKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDSTEMIIKIKMAQMHQQQQQQNSSQQQQQHALSNQQSQSSNHNMPQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQAGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVFSCHFSSDGKLLASGGQDKKAVLWYTDNLKPKTSLEEHTSMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVTSLDFHPKKDDFICSCDSDGEIRYWNITNGSCAAVFKGGMGQMRFQPRLGRYFAASVDNIVSIFDVETQARLHSLQGHTQKVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEALISSLAVSTASGLVASASHDKFVKLWK 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26428740 26436633 - CcPI632755_08g014580.1 Cco08g1458 185932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1458 897 MobiDBLite consensus disorder prediction 250 270 - -
Cco08g1458 897 CDD WD40 609 897 - -
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Cco08g1458 897 MobiDBLite consensus disorder prediction 414 540 - -
Cco08g1458 897 PANTHER TRANSCRIPTION ACTIVATOR MSS11 3 897 - GO:0005634(PANTHER)
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Cco08g1458 897 SUPERFAMILY WD40 repeat-like 607 897 IPR036322 GO:0005515(InterPro)
Cco08g1458 897 Gene3D - 747 897 IPR015943 GO:0005515(InterPro)
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 644 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 MobiDBLite consensus disorder prediction 238 293 - -
Cco08g1458 897 SMART WD40_4 648 687 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART WD40_4 817 856 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART WD40_4 734 770 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART WD40_4 858 897 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART WD40_4 691 731 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART WD40_4 606 645 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART WD40_4 773 811 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 820 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 SMART Lish 8 40 IPR006594 GO:0005515(InterPro)
Cco08g1458 897 Gene3D - 597 746 IPR015943 GO:0005515(InterPro)
Cco08g1458 897 Pfam LisH 10 36 IPR006594 GO:0005515(InterPro)
Cco08g1458 897 MobiDBLite consensus disorder prediction 459 519 - -
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515(InterPro)
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 MobiDBLite consensus disorder prediction 414 452 - -
Cco08g1458 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Cco08g1458 897 Pfam WD domain, G-beta repeat 650 687 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 Pfam WD domain, G-beta repeat 862 896 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 Pfam WD domain, G-beta repeat 610 644 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 Pfam WD domain, G-beta repeat 776 810 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515(InterPro)
Cco08g1458 897 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
Cco08g1458 897 MobiDBLite consensus disorder prediction 89 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1458 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0390 Cco-Chr5:3182714 Cco08g1458 Cco-Chr8:26428740 5.50E-116 dispersed
Cco06g1207 Cco-Chr6:21612672 Cco08g1458 Cco-Chr8:26428740 8.90E-148 dispersed
Cco07g1359 Cco-Chr7:27644046 Cco08g1458 Cco-Chr8:26428740 1.30E-08 dispersed
Cco08g1458 Cco-Chr8:26428740 Cco11g0418 Cco-Chr11:4303774 1.90E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59815 PF00400 WD40 0.0082 CL0186 Cco TR