Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1469 | ATGAGCAACATTATTGTCCCTTTACCTTCCAACCTTCTCCCAGACGCAGCAAATCCAGAATGGATGAGCAAAGGCGACAACGCATGGCAGTTAACGGCGGCGACACTAGTGGGACTACAGAGCGTGCCGGGTCTAATAATCCTGTACGGCGGAGCAGTTAAGAAGAAATGGGCCATAAACTCAGCGTTCATGGCTCTGTACGCGTTCGCTTGCGTGTTGGTTTGTTGGGTGGGGTGGGGCTACCGGCTGTCGTTTGGGGATAAATTGGCGCCGTTTTGGGGGAAATTGAATGTGGCTTTGGACCAGGAGTTTCTGCTGGCGCCAGCCTTTGCTGGGAAGTTTCCTTCGGCCACAATGGTTTTCTTTCAATTTGTATTTGCGGCCATTACTTTGGTTTTGATCGCTGGGGCTTTACTTGGACGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCGCTTTGGTTAACGTTTTCGTATACGTTTGTGGCCTTTAGTATTTGGAGTCCTAATGGCTTTTTCTTTAAAATGGGACTTATTGATTACTCTGGTGGTTACGTCATTCATTTGTCTTCTGGTGTTGCTGGCTTCACCGCTGCTTATTGGGTTGGGCCACGGCTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAATATTCTTCTGATGCTGGCCGGAGCAGGGTTGCTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCGGCTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCGATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTTCTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTTCTACGGCGCCTACAACAAATACATTGGCCTTTTCTACGGCTTCAACACAAAACAAGTTAAACTCGGCTTTCGCCAACTCGGCGTTCAACTCCTTGGAATCATCTTCGTCACTCTCATAAACGTCATTGTCACTAGCCTTATCTGTGTCCTCCTCCAATATATCGTCCCGCTCCGAATGTCCGAGGAGGACATGGCTATCGGAGACGAGGCCGCCCATGGCGAAGAGGCCTACGCCATTTGGGGCCAGGGTGAGAAGATGGATTCTTCTAAATACGATATTGAGATTCCTGTGTCAACCAAACATAGGCATTCAGGCCAGATTGAAATGGCCTAA | 1428 | 51.47 | MSNIIVPLPSNLLPDAANPEWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKLNVALDQEFLLAPAFAGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAALNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVFYGAYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEIPVSTKHRHSGQIEMA | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26536280 | 26540018 | + | CcPI632755_08g014690.1 | Cco08g1469 | 185943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1469 | 475 | ProSitePatterns | Ammonium transporters signature. | 180 | 205 | IPR018047 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Cco08g1469 | 475 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 17 | 454 | IPR001905 | GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER) | |
Cco08g1469 | 475 | FunFam | Ammonium transporter | 11 | 445 | - | - | |
Cco08g1469 | 475 | Pfam | Ammonium Transporter Family | 28 | 442 | IPR024041 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Cco08g1469 | 475 | Gene3D | Ammonium transporter AmtB like domains | 13 | 446 | IPR029020 | - | |
Cco08g1469 | 475 | NCBIfam | ammonium transporter | 26 | 442 | IPR001905 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Cco08g1469 | 475 | SUPERFAMILY | Ammonium transporter | 21 | 424 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1837 | Cco-Chr4:33179550 | Cco08g1469 | Cco-Chr8:26536280 | 1.40E-162 | dispersed | |
Cco08g1469 | Cco-Chr8:26536280 | Cco10g2221 | Cco-Chr10:35225742 | 2.00E-151 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1469 | K03320 | - | csv:101210590 | 904.434 |