Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1469 ATGAGCAACATTATTGTCCCTTTACCTTCCAACCTTCTCCCAGACGCAGCAAATCCAGAATGGATGAGCAAAGGCGACAACGCATGGCAGTTAACGGCGGCGACACTAGTGGGACTACAGAGCGTGCCGGGTCTAATAATCCTGTACGGCGGAGCAGTTAAGAAGAAATGGGCCATAAACTCAGCGTTCATGGCTCTGTACGCGTTCGCTTGCGTGTTGGTTTGTTGGGTGGGGTGGGGCTACCGGCTGTCGTTTGGGGATAAATTGGCGCCGTTTTGGGGGAAATTGAATGTGGCTTTGGACCAGGAGTTTCTGCTGGCGCCAGCCTTTGCTGGGAAGTTTCCTTCGGCCACAATGGTTTTCTTTCAATTTGTATTTGCGGCCATTACTTTGGTTTTGATCGCTGGGGCTTTACTTGGACGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCGCTTTGGTTAACGTTTTCGTATACGTTTGTGGCCTTTAGTATTTGGAGTCCTAATGGCTTTTTCTTTAAAATGGGACTTATTGATTACTCTGGTGGTTACGTCATTCATTTGTCTTCTGGTGTTGCTGGCTTCACCGCTGCTTATTGGGTTGGGCCACGGCTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAATATTCTTCTGATGCTGGCCGGAGCAGGGTTGCTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCGGCTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCGATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTTCTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTTCTACGGCGCCTACAACAAATACATTGGCCTTTTCTACGGCTTCAACACAAAACAAGTTAAACTCGGCTTTCGCCAACTCGGCGTTCAACTCCTTGGAATCATCTTCGTCACTCTCATAAACGTCATTGTCACTAGCCTTATCTGTGTCCTCCTCCAATATATCGTCCCGCTCCGAATGTCCGAGGAGGACATGGCTATCGGAGACGAGGCCGCCCATGGCGAAGAGGCCTACGCCATTTGGGGCCAGGGTGAGAAGATGGATTCTTCTAAATACGATATTGAGATTCCTGTGTCAACCAAACATAGGCATTCAGGCCAGATTGAAATGGCCTAA 1428 51.47 MSNIIVPLPSNLLPDAANPEWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKLNVALDQEFLLAPAFAGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAALNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVFYGAYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEIPVSTKHRHSGQIEMA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26536280 26540018 + CcPI632755_08g014690.1 Cco08g1469 185943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1469 475 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco08g1469 475 PANTHER AMMONIUM TRANSPORTER MEP2 17 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cco08g1469 475 FunFam Ammonium transporter 11 445 - -
Cco08g1469 475 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco08g1469 475 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Cco08g1469 475 NCBIfam ammonium transporter 26 442 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco08g1469 475 SUPERFAMILY Ammonium transporter 21 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1837 Cco-Chr4:33179550 Cco08g1469 Cco-Chr8:26536280 1.40E-162 dispersed
Cco08g1469 Cco-Chr8:26536280 Cco10g2221 Cco-Chr10:35225742 2.00E-151 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1469 K03320 - csv:101210590 904.434