Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1470 ATGCACACCAATACTCTGTCATTCAAAGAATGTGTGATGGGGGCTCCGTTCGAGGGAATAGTAAAGGATTTGAAGGGAAGGGCGGCGTGCTATAAACAGGATTGGATAAGTGCACTATGTTCTGGCGTCAGGATTTTGGCTCCTACTATGTACATTTTCTTCGCCTCAGCTCTACCTGTTATTGCCTTTGGGGAGCAACTTAGTAGGGATACAGGTGGAAGATTGAGCACCGTGGAAACATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATCTTTGGGGGACAGCCTTTGTTGATTTTAGGAGTGGCAGAACCAACTGTTATAATGTACATTTACTTGTACAGTTTCTCCCAAGGCCGGCCAGAGTTAGGAGGCGATCTCTTTTTAGCTTGGGCTGGATGGGTGTGCATTTGGACAGGATTCTTCCTGATCCTCCTTGCAATCTTTAATGCTTGCACCGTAATCACCAAATTTACCAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATAAGCGAATTCCAGATTCCCAAGTCAGAAAAGCCAGAGGTATTGGAGTACCAATTTGAGTGGTTGTATGCAAATGGGTTGCTTGCGGTAATTTTTTCAATGGGTCTACTCTTCACAGCCTTGAAAAGCAGACATGCAAGATCGTGGAAATATGGAACTGGCTGGTTCCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTTGTGTTCTGGACAGCATTGTCGTATGGAGTTCCCGGTGAAGTTCCAAATGGAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGAGTGTAGTGAAGGACATGGGTAAGGTTCCATTGACTTACATCTTTGCTGCAACTCTGCCAGCCGTCATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCGCAAATGGCGCAACAGAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTGTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTTGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAGGAATGTATCAAACAAAAAGCAAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACGCATCTCCAACTCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTAATGAATGCTGATGAAGGTGATCGAAAGGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCTGTATCAATATTTGCTATCCCTATAATGAGAATGATACCTACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCTGTTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTGTTACTCTTCATTACACCCGGTCGGCGTTTCAAAGTCTTGGAGGGGTCTCATTTATCTTTCGTTGAATCTGTGCCATTCAAGATCATTGCTACGTTTACCCTCCTCCAGTTTGCATATTTCCTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCCGGACATCGCGCCATTAATCTCACAGCACCGGAAAAGGAGCCACCTGATTCAATTGCTGAAGAGAGTTCATCCCGAAGATTCCCTTCGAATGCAATGAAGCAGTTGGAGGCAAATAGGATAAGAGGGTGTTTGATCGAGCCGAATACAACGAATAATACGAAAGACAGTTGGTTACGATCATCAAACCAATACACCCATCCGACCGAAGGGTCGCCGCCGAGAGCGACGGCGTGGCCGGAGTACTTCAGGTCCGCCGCCGCCATCTCCGAGAGCAAGTTGAATCTGGGAATTGACAGTGCATGCGAAAAATAA 2133 45.15 MHTNTLSFKECVMGAPFEGIVKDLKGRAACYKQDWISALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGRLSTVETLASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYSFSQGRPELGGDLFLAWAGWVCIWTGFFLILLAIFNACTVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFQIPKSEKPEVLEYQFEWLYANGLLAVIFSMGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVFWTALSYGVPGEVPNGVPRRLFCPLPWEPASLYHWSVVKDMGKVPLTYIFAATLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMTVICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDASPTPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAVSIFAIPIMRMIPTSVLWGYFAYMAVDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVESVPFKIIATFTLLQFAYFLLCFGVTWIPVAGILFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGAGHRAINLTAPEKEPPDSIAEESSSRRFPSNAMKQLEANRIRGCLIEPNTTNNTKDSWLRSSNQYTHPTEGSPPRATAWPEYFRSAAAISESKLNLGIDSACEK 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26547740 26555754 + CcPI632755_08g014700.1 Cco08g1470 185944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1470 710 PANTHER ANION EXCHANGE PROTEIN 15 618 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Cco08g1470 710 Pfam HCO3- transporter integral membrane domain 208 383 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco08g1470 710 Pfam HCO3- transporter integral membrane domain 16 194 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco08g1470 710 Pfam HCO3- transporter integral membrane domain 457 599 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco08g1470 710 FunFam probable boron transporter 2 27 69 - -
Cco08g1470 710 MobiDBLite consensus disorder prediction 615 636 - -
Cco08g1470 710 MobiDBLite consensus disorder prediction 658 677 - -
Cco08g1470 710 MobiDBLite consensus disorder prediction 658 683 - -
Cco08g1470 710 Gene3D Helical hairpin bin 27 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1470 K24194 - - csv:101220188 1170.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0534 Cco-Chr1:5148919 Cco08g1470 Cco-Chr8:26547740 4.30E-253 dispersed
Cco08g1470 Cco-Chr8:26547740 Cco10g1160 Cco-Chr10:24152850 7.10E-214 dispersed
Cco07g1363 Cco-Chr7:27693852 Cco08g1470 Cco-Chr8:26547740 7.50E-260 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g435 . . . . . . . . Cmo05g00417 Cmo12g00272 . Cma05g00405 . Car12g00301 . Cpe07g00280 . Bhi04g01006 . . . . . . . . . . . . . . . Cone17ag1040 Cone20ag0659 . . . Cme03g01647 . . . Bda13g01271 Bpe14g00572 . . Bma02g00032 . . . . Cma12g00320 . Car05g00340 Cpe11g00345 . . . . . . . . Cla08g01308 Cam08g1768 Cec08g1349 Cco08g1470 Clacu08g1464 . Cre08g1251 Lsi08g01171 . Chy03g01147 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g2111 . 1 406 Antiporters AT5G46110 79.6 5.5e-174 607.4
Cco05g2643 . 55 415 Antiporters AT5G46110 74.8 3.0e-148 521.9
Cco10g0522 . 1 395 Antiporters AT5G54800 73.5 3.2e-160 561.6
Cco05g1659 . 1 395 Antiporters AT5G54800 73.5 6.1e-159 557.4
Cco04g1994 . 1 391 Antiporters AT5G54800 72.0 2.0e-149 525.8
Cco09g2120 . 51 394 Antiporters AT3G01550 65.2 3.4e-122 435.3
Cco01g1463 . 53 417 Antiporters AT3G01550 59.5 1.4e-112 403.3
Cco01g1463 . 1 419 Antiporters AT5G33320 72.2 1.5e-155 546.2
Cco09g2120 . 69 397 Antiporters AT5G33320 61.5 3.2e-110 395.6
Cco05g1659 . 1 396 Antiporters AT1G61800 72.9 2.6e-160 562.0
Cco04g1994 . 46 388 Antiporters AT1G61800 81.7 2.9e-159 558.5
Cco10g0522 . 39 396 Antiporters AT1G61800 78.8 4.2e-158 554.7
Cco05g0293 . 106 405 Antiporters AT1G61800 52.6 1.2e-85 313.9
Cco05g0293 . 48 417 Antiporters AT5G17630 75.7 3.3e-150 528.5
Cco05g1659 . 81 394 Antiporters AT5G17630 54.3 2.9e-90 329.3
Cco10g0522 . 89 394 Antiporters AT5G17630 53.7 7.2e-89 324.7
Cco04g1994 . 92 389 Antiporters AT5G17630 54.2 1.6e-88 323.6
Cco10g0404 . 79 450 Antiporters AT3G13320 79.3 4.1e-159 558.1
Cco02g1143 . 72 450 Antiporters AT3G13320 76.6 1.1e-156 550.1
Cco07g1500 . 156 525 Antiporters AT3G13320 75.7 1.8e-154 542.7
Cco04g0890 . 5 429 Antiporters AT2G38170 71.6 7.7e-164 573.9
Cco10g2192 . 24 423 Antiporters AT2G38170 65.3 1.7e-139 493.0
Cco03g0081 . 32 379 Antiporters AT2G38170 62.3 1.2e-116 417.2
Cco04g0890 . 1 397 Antiporters AT3G51860 72.4 1.9e-151 532.7
Cco10g2192 . 24 399 Antiporters AT3G51860 67.0 9.7e-135 477.2
Cco03g0081 . 32 370 Antiporters AT3G51860 65.7 4.1e-117 418.7
Cco02g1143 . 64 417 Antiporters AT3G51860 50.4 1.9e-82 303.5
Cco10g0404 . 79 421 Antiporters AT3G51860 51.6 3.6e-81 299.3
Cco07g1500 . 162 493 Antiporters AT3G51860 50.1 1.3e-78 290.8
Cco04g0890 . 34 434 Antiporters AT5G01490 62.7 9.1e-138 487.3
Cco10g2192 . 13 433 Antiporters AT5G01490 60.5 9.4e-135 477.2
Cco03g0081 . 26 379 Antiporters AT5G01490 57.1 6.3e-107 384.8
Cco10g0404 . 78 450 Antiporters AT1G55720 75.1 8.6e-149 523.9
Cco02g1143 . 72 446 Antiporters AT1G55720 73.7 1.5e-145 513.1
Cco07g1500 . 156 522 Antiporters AT1G55720 71.4 1.6e-139 493.0
Cco10g0404 . 78 450 Antiporters AT1G55730 79.9 9.7e-161 563.5
Cco02g1143 . 54 446 Antiporters AT1G55730 74.4 2.6e-158 555.4
Cco07g1500 . 156 526 Antiporters AT1G55730 76.3 7.2e-156 547.4
Cco04g0890 . 65 430 Antiporters AT1G55730 51.6 3.4e-97 352.4
Cco03g1707 . 4 535 Antiporters AT5G27150 77.5 1.4e-233 805.8
Cco06g0554 . 22 527 Antiporters AT5G27150 74.6 1.8e-217 752.3
Cco09g0610 . 25 531 Antiporters AT5G27150 70.0 1.6e-202 702.6
Cco09g2294 . 12 517 Antiporters AT5G27150 60.0 8.4e-167 583.9
Cco09g0611 . 24 520 Antiporters AT5G27150 59.9 1.7e-159 559.7
Cco06g0554 . 22 536 Antiporters AT3G06370 71.9 1.8e-209 725.7
Cco03g1707 . 5 533 Antiporters AT3G06370 70.4 4.2e-206 714.5
Cco09g0610 . 25 532 Antiporters AT3G06370 66.7 5.8e-187 651.0
Cco09g2294 . 5 517 Antiporters AT3G06370 58.9 5.4e-161 564.7
Cco09g0611 . 24 520 Antiporters AT3G06370 60.4 1.8e-156 549.7
Cco09g2294 . 1 524 Antiporters AT5G55470 69.1 9.4e-211 729.9
Cco03g1707 . 18 520 Antiporters AT5G55470 59.8 3.0e-169 592.0
Cco06g0554 . 19 514 Antiporters AT5G55470 59.1 4.9e-167 584.7
Cco09g0610 . 11 518 Antiporters AT5G55470 55.4 1.1e-153 540.4
Cco09g0611 . 24 520 Antiporters AT5G55470 52.3 4.2e-134 475.3
Cco03g1707 . 10 534 Antiporters AT3G05030 78.9 3.9e-236 814.3
Cco06g0554 . 22 527 Antiporters AT3G05030 75.2 4.2e-222 767.7
Cco09g0610 . 25 534 Antiporters AT3G05030 69.5 8.8e-204 706.8
Cco09g2294 . 12 517 Antiporters AT3G05030 59.3 3.8e-167 585.1
Cco09g0611 . 24 520 Antiporters AT3G05030 59.4 1.8e-161 566.2
Cco01g0534 . 103 673 Antiporters AT1G15460 69.4 6.0e-227 783.9
Cco07g1363 . 102 618 Antiporters AT1G15460 71.8 7.3e-217 750.4
Cco08g1470 . 111 627 Antiporters AT1G15460 65.9 9.3e-204 706.8
Cco10g1160 . 102 645 Antiporters AT1G15460 59.2 5.5e-180 627.9
Cco01g1462 . 102 644 Antiporters AT1G15460 56.6 3.4e-174 608.6
Cco10g1160 . 3 709 Antiporters AT3G06450 69.8 7.9e-293 1003.0
Cco01g1462 . 3 683 Antiporters AT3G06450 69.1 2.9e-279 958.0
Cco01g0534 . 9 656 Antiporters AT3G06450 55.8 1.0e-215 746.9
Cco08g1470 . 15 603 Antiporters AT3G06450 58.8 4.3e-214 741.5
Cco07g1363 . 6 611 Antiporters AT3G06450 57.9 9.6e-214 740.3
Cco10g1160 . 1 716 Antiporters AT2G47160 79.1 0.0e+00 1153.3
Cco01g1462 . 1 670 Antiporters AT2G47160 74.4 6.4e-303 1036.6
Cco01g0534 . 9 656 Antiporters AT2G47160 56.5 3.3e-214 741.9
Cco07g1363 . 1 600 Antiporters AT2G47160 58.6 7.3e-214 740.7
Cco08g1470 . 16 603 Antiporters AT2G47160 58.7 8.1e-213 737.3
Cco01g0534 . 9 677 Antiporters AT1G74810 69.3 1.5e-272 935.6
Cco07g1363 . 1 618 Antiporters AT1G74810 70.6 1.4e-262 902.5
Cco08g1470 . 16 670 Antiporters AT1G74810 63.4 1.4e-243 839.3
Cco10g1160 . 7 645 Antiporters AT1G74810 59.8 4.1e-219 758.1
Cco01g1462 . 7 644 Antiporters AT1G74810 57.9 3.6e-215 745.0
Cco10g1160 . 1 708 Antiporters AT3G62270 81.5 0.0e+00 1156.7
Cco01g1462 . 1 694 Antiporters AT3G62270 76.0 9.9e-309 1055.8
Cco08g1470 . 16 620 Antiporters AT3G62270 60.0 2.1e-218 755.7
Cco01g0534 . 9 656 Antiporters AT3G62270 58.4 4.0e-217 751.5
Cco07g1363 . 1 600 Antiporters AT3G62270 60.2 3.7e-215 745.0
Cco01g0534 . 1 673 Antiporters AT4G32510 64.7 6.1e-255 877.1
Cco08g1470 . 16 610 Antiporters AT4G32510 70.8 1.0e-249 859.8
Cco07g1363 . 1 603 Antiporters AT4G32510 68.0 3.0e-246 848.2
Cco10g1160 . 1 645 Antiporters AT4G32510 55.1 1.0e-206 716.8
Cco01g1462 . 1 644 Antiporters AT4G32510 54.3 4.0e-206 714.9
Cco08g1470 . 16 607 Antiporters AT5G25430 72.4 2.1e-252 868.6
Cco01g0534 . 9 673 Antiporters AT5G25430 64.4 2.8e-244 841.6
Cco07g1363 . 2 620 Antiporters AT5G25430 66.3 1.5e-237 819.3
Cco10g1160 . 7 645 Antiporters AT5G25430 56.2 6.7e-206 714.1
Cco01g1462 . 7 644 Antiporters AT5G25430 54.6 3.2e-200 695.3
Cco01g0721 . 27 1144 Antiporters AT2G01980 66.5 0.0e+00 1391.3
Cco01g0721 . 20 738 Antiporters AT1G14660 66.1 3.5e-272 934.5
Cco08g1878 . 118 629 Antiporters AT5G11800 85.2 6.2e-235 810.4
Cco03g1622 . 48 587 Antiporters AT5G11800 78.4 1.9e-223 772.3
Cco05g0909 . 57 563 Antiporters AT5G11800 69.9 2.1e-187 652.5
Cco05g0909 . 31 565 Antiporters AT5G51710 82.4 8.4e-242 833.2
Cco08g1878 . 116 642 Antiporters AT5G51710 68.7 1.8e-188 656.0
Cco03g1622 . 51 560 Antiporters AT5G51710 68.8 6.8e-183 637.5
Cco03g1622 . 39 584 Antiporters AT2G19600 80.7 6.5e-229 790.4
Cco08g1878 . 109 624 Antiporters AT2G19600 82.4 8.8e-226 780.0
Cco05g0909 . 35 563 Antiporters AT2G19600 67.5 1.0e-181 633.6
Cco05g1189 . 148 563 Antiporters AT1G49810 76.8 2.9e-178 621.7
Cco05g1189 . 1 581 Antiporters AT3G19490 77.5 9.4e-249 856.3
Cco02g2478 . 99 569 Antiporters AT5G12860 91.3 4.8e-250 860.5
Cco10g0913 . 83 577 Antiporters AT5G64280 67.3 5.2e-196 681.0
Cco10g0913 . 1 577 Antiporters AT5G64290 69.9 2.1e-216 748.8
Cco07g0245 . 3 379 Antiporters AT4G28390 81.5 2.7e-175 611.7
Cco08g1790 . 23 409 Antiporters AT4G28390 73.5 2.5e-157 552.0
Cco08g1789 . 65 376 Antiporters AT4G28390 86.9 2.3e-155 545.4
Cco01g1747 . 5 307 Antiporters AT4G28390 63.2 7.4e-109 391.0
Cco08g1790 . 21 410 Antiporters AT3G08580 78.6 4.4e-170 594.3
Cco08g1789 . 21 377 Antiporters AT3G08580 81.1 6.8e-163 570.5
Cco07g0245 . 1 378 Antiporters AT3G08580 72.3 5.1e-150 527.7
Cco01g1747 . 7 307 Antiporters AT3G08580 57.6 8.5e-97 350.9
Cco08g1790 . 21 410 Antiporters AT5G13490 81.9 3.7e-180 627.9
Cco08g1789 . 1 377 Antiporters AT5G13490 81.4 2.5e-173 605.1
Cco07g0245 . 8 378 Antiporters AT5G13490 79.6 3.4e-162 568.2
Cco01g1747 . 8 307 Antiporters AT5G13490 61.8 4.6e-106 381.7
Cco01g1747 . 4 301 Antiporters AT5G17400 79.9 1.0e-137 486.5
Cco07g0245 . 79 365 Antiporters AT5G17400 64.5 1.2e-109 393.3
Cco08g1789 . 77 368 Antiporters AT5G17400 62.7 1.1e-107 386.7
Cco08g1790 . 110 401 Antiporters AT5G17400 62.7 1.1e-107 386.7
Cco03g1752 . 4 543 Antiporters AT1G08960 65.9 5.3e-185 644.4
Cco10g1579 . 41 565 Antiporters AT5G17850 52.4 1.3e-149 526.9
Cco10g1077 . 56 592 Antiporters AT2G47600 71.1 4.1e-214 741.1
Cco07g1383 . 1 300 Antiporters AT1G79900 68.4 1.7e-116 416.0
Cco09g0206 . 120 419 Antiporters AT1G79900 67.4 1.9e-112 402.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001156 1 4 1 1 1 3 3 3 2 2 3 3 3 2 2 3 3 2 3 3 2 2 2 2 2 2 3 9 4 3 79