Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1470 | ATGCACACCAATACTCTGTCATTCAAAGAATGTGTGATGGGGGCTCCGTTCGAGGGAATAGTAAAGGATTTGAAGGGAAGGGCGGCGTGCTATAAACAGGATTGGATAAGTGCACTATGTTCTGGCGTCAGGATTTTGGCTCCTACTATGTACATTTTCTTCGCCTCAGCTCTACCTGTTATTGCCTTTGGGGAGCAACTTAGTAGGGATACAGGTGGAAGATTGAGCACCGTGGAAACATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATCTTTGGGGGACAGCCTTTGTTGATTTTAGGAGTGGCAGAACCAACTGTTATAATGTACATTTACTTGTACAGTTTCTCCCAAGGCCGGCCAGAGTTAGGAGGCGATCTCTTTTTAGCTTGGGCTGGATGGGTGTGCATTTGGACAGGATTCTTCCTGATCCTCCTTGCAATCTTTAATGCTTGCACCGTAATCACCAAATTTACCAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATAAGCGAATTCCAGATTCCCAAGTCAGAAAAGCCAGAGGTATTGGAGTACCAATTTGAGTGGTTGTATGCAAATGGGTTGCTTGCGGTAATTTTTTCAATGGGTCTACTCTTCACAGCCTTGAAAAGCAGACATGCAAGATCGTGGAAATATGGAACTGGCTGGTTCCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTTGTGTTCTGGACAGCATTGTCGTATGGAGTTCCCGGTGAAGTTCCAAATGGAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGAGTGTAGTGAAGGACATGGGTAAGGTTCCATTGACTTACATCTTTGCTGCAACTCTGCCAGCCGTCATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCGCAAATGGCGCAACAGAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTGTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTTGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAGGAATGTATCAAACAAAAAGCAAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACGCATCTCCAACTCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTAATGAATGCTGATGAAGGTGATCGAAAGGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCTGTATCAATATTTGCTATCCCTATAATGAGAATGATACCTACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCTGTTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTGTTACTCTTCATTACACCCGGTCGGCGTTTCAAAGTCTTGGAGGGGTCTCATTTATCTTTCGTTGAATCTGTGCCATTCAAGATCATTGCTACGTTTACCCTCCTCCAGTTTGCATATTTCCTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCCGGACATCGCGCCATTAATCTCACAGCACCGGAAAAGGAGCCACCTGATTCAATTGCTGAAGAGAGTTCATCCCGAAGATTCCCTTCGAATGCAATGAAGCAGTTGGAGGCAAATAGGATAAGAGGGTGTTTGATCGAGCCGAATACAACGAATAATACGAAAGACAGTTGGTTACGATCATCAAACCAATACACCCATCCGACCGAAGGGTCGCCGCCGAGAGCGACGGCGTGGCCGGAGTACTTCAGGTCCGCCGCCGCCATCTCCGAGAGCAAGTTGAATCTGGGAATTGACAGTGCATGCGAAAAATAA | 2133 | 45.15 | MHTNTLSFKECVMGAPFEGIVKDLKGRAACYKQDWISALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGRLSTVETLASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYSFSQGRPELGGDLFLAWAGWVCIWTGFFLILLAIFNACTVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFQIPKSEKPEVLEYQFEWLYANGLLAVIFSMGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVFWTALSYGVPGEVPNGVPRRLFCPLPWEPASLYHWSVVKDMGKVPLTYIFAATLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMTVICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDASPTPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAVSIFAIPIMRMIPTSVLWGYFAYMAVDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVESVPFKIIATFTLLQFAYFLLCFGVTWIPVAGILFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGAGHRAINLTAPEKEPPDSIAEESSSRRFPSNAMKQLEANRIRGCLIEPNTTNNTKDSWLRSSNQYTHPTEGSPPRATAWPEYFRSAAAISESKLNLGIDSACEK | 710 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26547740 | 26555754 | + | CcPI632755_08g014700.1 | Cco08g1470 | 185944 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1470 | 710 | PANTHER | ANION EXCHANGE PROTEIN | 15 | 618 | IPR003020 | GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER) | |
Cco08g1470 | 710 | Pfam | HCO3- transporter integral membrane domain | 208 | 383 | IPR011531 | GO:0006820(InterPro)|GO:0016020(InterPro) | |
Cco08g1470 | 710 | Pfam | HCO3- transporter integral membrane domain | 16 | 194 | IPR011531 | GO:0006820(InterPro)|GO:0016020(InterPro) | |
Cco08g1470 | 710 | Pfam | HCO3- transporter integral membrane domain | 457 | 599 | IPR011531 | GO:0006820(InterPro)|GO:0016020(InterPro) | |
Cco08g1470 | 710 | FunFam | probable boron transporter 2 | 27 | 69 | - | - | |
Cco08g1470 | 710 | MobiDBLite | consensus disorder prediction | 615 | 636 | - | - | |
Cco08g1470 | 710 | MobiDBLite | consensus disorder prediction | 658 | 677 | - | - | |
Cco08g1470 | 710 | MobiDBLite | consensus disorder prediction | 658 | 683 | - | - | |
Cco08g1470 | 710 | Gene3D | Helical hairpin bin | 27 | 69 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0534 | Cco-Chr1:5148919 | Cco08g1470 | Cco-Chr8:26547740 | 4.30E-253 | dispersed | |
Cco08g1470 | Cco-Chr8:26547740 | Cco10g1160 | Cco-Chr10:24152850 | 7.10E-214 | dispersed | |
Cco07g1363 | Cco-Chr7:27693852 | Cco08g1470 | Cco-Chr8:26547740 | 7.50E-260 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1470 | K24194 | - | csv:101220188 | 1170.22 |