Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1474 ATGGTTTTTGAGCTGTTTTATGACGTTGCTCCAAAAACGGCCGAGAATTTTCGTGCACTGTGTACAGGAGAGAAAGGAATTGGCCCCAAAACTGGAAGACCACTACATTATAAGGGGTCCTTTTTTCATCGGGTTATTGGAGGTTCTATGGCACAGGGTGGAGATTTTGTCAAGCGAGATGGTACTGTTGGAGAGAGCATATACGGTGGGAAGTTTCCAGATGAACTTCCTCGACTAAAACATGATGGACCTGGTCTTCTATCAATGGCAATTGCTGACCGTGACACTCTAGGCTCCCATTTTCTTATCACATTTAAGGCTAATAATCATCTCGACAGGAAGCATGTAGTATTTGGAAAGCTTGTCCAAGGTTTTGACGTACTGAAAAAGATAGAAAGAGTGGATGTAGAAGATGGCGTTCCAACTGTTACAGTGAAAATTGTTAATTGTGGCGAGTTTAATGAAGAAAAAAGAAAGATGAATAGAGTTAAAACAGGAAAAAATGCTTCAGATGATGATAGTCATGAAGAAAAGCGAAGAGGAAAGCAGAAAAAATCAAGGGAAAGGAAGAGGAGGAAGAAAAAATACGACACGTCTGATTCAGATAGTTCTTCTGATTCAGACTTAGACTCTGACTCTGAGAGTGTTTCTGACACAGATTTGTCGTCATCATCATCTTCTTCTGAAAGTTCTTCCAGTGATGACAGGTCAAGAAAGAGAAAGAGGACTTCTAAGAGAGGTAGATATAGGCGTGGGAGAAGAAAGGATAAGAGACGTGAACGAAAGAGACGGAGGCATGATAAGAAGTCAAAGAGAAAATCTAAAAGGGACTTGGACAGTCTTACGGATACTGAAAGTGATAGCAAGAGCAGAAGCACGTCTGAGCAAGATGGCCTTGATGTTCAAGGAAAAGATCTAAACCGTAAAGGCTTGTCAGTGAAATCTGCTGAAGATGTACCTCAAGCCTCAGATGCCCGCCACAGAAGGAGAGAGGCAGATATGGTGGAAAATGATGGGGAGAGATCCCCTAAGGAGAATGGTGAGCGAAGGAGCAATGGCATTGCTGCTGTGGAATCTAAATCTGACAGAAGCTTGGAAAGACAACCTGATATTGTAGATGACCACCCTGGAAAATCTAGGAGTCGAAGCATTAGTCCTAGAAGGACGATGAGTAAGAGTATGAGTATTAGTCCCAGAAAGAGTCGCAGCAAGAGCCGTAGTGTTAGTCCAAAACGAAGTATGAGCAGGAGTCGAAGTGTTAGTGGAAGCCCGCCTCGAGCACCATTGAGGAGCAGGAGCATCAGCAGAAGTCCTGTTCGAAATGGTAGCAGGAGCGTCAGCAGAAGTCCTGTTAGAAATGGTAGCCGAAGCCCAGGTAGAAGTATTAGCAGGAGCCCAGGTAGGGGAAGGAAAGGTAGGAGTATCAGTAGAAGCCCAGTACGAAGCGGGCCTCAGAGAGGTATTAGCAGAAGCCCCGTGAGATCCAATCCACAAAGAAGTCCAAGCAGGAGCCCACCTAGAAGAGCCTCTAGAAAATCAATTAGTAGGAGTCCTGCAAGAGTTTCCAGAAGCGTAAGCAGAAGTCCAGTGAGGTCCTCTCGTCAGAGTTTGAGCAGGAGCTCAGGTAGGGCACCTTCTAGGAGGAGTATCAGTCGAAGTCCTCGGGCACCAGCTAGGAATCGAAGGAGCTACTCTAGGAGTCTTACTCCTGTCCGAAGGCCAAGGTCACCGGCTTCTGATAGAGGGAGAAGTGCATCAAGAAGTGTTTCTCCAGAAGGTTCTCCTAAGCGCATCAGAAGGGGGCGTGGTTTTAGTGAGCGTTATTCATTTGCTCGAAGATACAGAACACCCTCTGCATCTCCTGTCAGGTCATACCGTTACAGTGGAAGAGTTGAACGTGACAGATATTCAAATTACAGAAGGTATTCTCCTAGGCGCTATAGAAGCCCTCCTAGAGGAAGATCTCCGCTAAGATACAGAAACAGAAGAAGCAGGACTCCTTCTGCATCCCGTAGTCCTCGTTACCGTAGTCGTCGTTATAGCCGTAGCCGAAGCCCTATTAGGAGCCGTTCCCCAGTCGAGGGATCCAGGAGTTAG 2097 46.07 MVFELFYDVAPKTAENFRALCTGEKGIGPKTGRPLHYKGSFFHRVIGGSMAQGGDFVKRDGTVGESIYGGKFPDELPRLKHDGPGLLSMAIADRDTLGSHFLITFKANNHLDRKHVVFGKLVQGFDVLKKIERVDVEDGVPTVTVKIVNCGEFNEEKRKMNRVKTGKNASDDDSHEEKRRGKQKKSRERKRRKKKYDTSDSDSSSDSDLDSDSESVSDTDLSSSSSSSESSSSDDRSRKRKRTSKRGRYRRGRRKDKRRERKRRRHDKKSKRKSKRDLDSLTDTESDSKSRSTSEQDGLDVQGKDLNRKGLSVKSAEDVPQASDARHRRREADMVENDGERSPKENGERRSNGIAAVESKSDRSLERQPDIVDDHPGKSRSRSISPRRTMSKSMSISPRKSRSKSRSVSPKRSMSRSRSVSGSPPRAPLRSRSISRSPVRNGSRSVSRSPVRNGSRSPGRSISRSPGRGRKGRSISRSPVRSGPQRGISRSPVRSNPQRSPSRSPPRRASRKSISRSPARVSRSVSRSPVRSSRQSLSRSSGRAPSRRSISRSPRAPARNRRSYSRSLTPVRRPRSPASDRGRSASRSVSPEGSPKRIRRGRGFSERYSFARRYRTPSASPVRSYRYSGRVERDRYSNYRRYSPRRYRSPPRGRSPLRYRNRRSRTPSASRSPRYRSRRYSRSRSPIRSRSPVEGSRS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26599483 26606955 + CcPI632755_08g014740.1 Cco08g1474 185948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1474 698 MobiDBLite consensus disorder prediction 412 462 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 320 348 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 239 272 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 478 504 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 383 403 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 273 294 - -
Cco08g1474 698 Gene3D - 1 154 IPR029000 -
Cco08g1474 698 MobiDBLite consensus disorder prediction 360 381 - -
Cco08g1474 698 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 152 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 MobiDBLite consensus disorder prediction 627 641 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 515 548 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 645 669 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 216 231 - -
Cco08g1474 698 SUPERFAMILY Cyclophilin-like 1 154 IPR029000 -
Cco08g1474 698 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 153 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 556 572 - -
Cco08g1474 698 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 160 - -
Cco08g1474 698 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 5 20 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 MobiDBLite consensus disorder prediction 158 698 - -
Cco08g1474 698 MobiDBLite consensus disorder prediction 593 609 - -
Cco08g1474 698 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 151 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco08g1474 698 MobiDBLite consensus disorder prediction 158 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1474 K09566 - - csv:101210345 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1474 Cco-Chr8:26599483 Cco09g0713 Cco-Chr9:6493163 1.40E-12 dispersed
Cco08g1474 Cco-Chr8:26599483 Cco02g0629 Cco-Chr2:6195441 1.70E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105