Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1476 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTTTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGACAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACATCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCATTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCAAATGAAACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAAAGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTGTACATATTGTTCTTGAGAGGAGGCACCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAATGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGGGAAGAACATTATGTAACTCCAGAGGTGGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCCGGTTGATTGATGACCATAATGCGACAGCATTTAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATGTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATTGGCAGTAGTTTTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATACCTCCCTTCCCACCCCTCGCCCCATGCAACAAATGA 1845 42.17 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKTTSYDPEFSVLNLDAASNNRVSANSSRSCTLLHPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKAEQFRSPNETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESVHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEHYVTPEVATGRADVGRRLVGRLIDDHNATAFSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDMFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSFILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYGNENEVGMNNSLGRLKSHRYILKSIPPFPPLAPCNK 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26619917 26625101 - CcPI632755_08g014760.1 Cco08g1476 185950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1476 614 ProSiteProfiles CRC domain profile. 290 416 IPR005172 -
Cco08g1476 614 MobiDBLite consensus disorder prediction 252 292 - -
Cco08g1476 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 378 414 IPR005172 -
Cco08g1476 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 292 327 IPR005172 -
Cco08g1476 614 MobiDBLite consensus disorder prediction 252 269 - -
Cco08g1476 614 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 107 613 IPR044522 GO:0003700(InterPro)
Cco08g1476 614 SMART CXC_2 376 417 IPR033467 -
Cco08g1476 614 SMART CXC_2 289 330 IPR033467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0579 Cco-Chr5:4719902 Cco08g1476 Cco-Chr8:26619917 1.10E-40 dispersed
Cco06g0973 Cco-Chr6:13123099 Cco08g1476 Cco-Chr8:26619917 2.50E-25 dispersed
Cco08g1476 Cco-Chr8:26619917 Cco11g0258 Cco-Chr11:2517274 2.20E-25 dispersed
Cco08g1476 Cco-Chr8:26619917 Cco06g0644 Cco-Chr6:7116870 9.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59817 PF03638 TCR 1.40E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1476 K21776 - cit:102611790 277.33