Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1476 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTTTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGACAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACATCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCATTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCAAATGAAACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAAAGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTGTACATATTGTTCTTGAGAGGAGGCACCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAATGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGGGAAGAACATTATGTAACTCCAGAGGTGGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCCGGTTGATTGATGACCATAATGCGACAGCATTTAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATGTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATTGGCAGTAGTTTTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATACCTCCCTTCCCACCCCTCGCCCCATGCAACAAATGA 1845 42.17 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKTTSYDPEFSVLNLDAASNNRVSANSSRSCTLLHPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKAEQFRSPNETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESVHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEHYVTPEVATGRADVGRRLVGRLIDDHNATAFSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDMFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSFILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYGNENEVGMNNSLGRLKSHRYILKSIPPFPPLAPCNK 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26619917 26625101 - CcPI632755_08g014760.1 Cco08g1476 185950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1476 614 ProSiteProfiles CRC domain profile. 290 416 IPR005172 -
Cco08g1476 614 MobiDBLite consensus disorder prediction 252 292 - -
Cco08g1476 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 378 414 IPR005172 -
Cco08g1476 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 292 327 IPR005172 -
Cco08g1476 614 MobiDBLite consensus disorder prediction 252 269 - -
Cco08g1476 614 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 107 613 IPR044522 GO:0003700(InterPro)
Cco08g1476 614 SMART CXC_2 376 417 IPR033467 -
Cco08g1476 614 SMART CXC_2 289 330 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1476 K21776 - - cit:102611790 277.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0579 Cco-Chr5:4719902 Cco08g1476 Cco-Chr8:26619917 1.10E-40 dispersed
Cco06g0973 Cco-Chr6:13123099 Cco08g1476 Cco-Chr8:26619917 2.50E-25 dispersed
Cco08g1476 Cco-Chr8:26619917 Cco11g0258 Cco-Chr11:2517274 2.20E-25 dispersed
Cco08g1476 Cco-Chr8:26619917 Cco06g0644 Cco-Chr6:7116870 9.60E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g315 . . . . . . . Bma01g02162 . . . Cma05g00464 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 . . . .
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1476 . 294 419 CPP Transcription Factor Family AT3G22780 57.1 1.9e-38 157.9
Cco08g1476 . 266 419 CPP Transcription Factor Family AT4G14770 51.3 4.3e-40 163.3
Cco11g0258 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.6e-142 501.5
Cco06g0973 . 124 606 CPP Transcription Factor Family AT2G20110 52.7 9.5e-126 447.6
Cco11g0258 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cco06g0973 . 114 637 CPP Transcription Factor Family AT4G29000 53.3 1.3e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59817 PF03638 TCR 1.40E-10 No_clan Cco TF