Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1493 ATGGCTCTCTTCTTCTTCTTCTTCTTATTCTTCTTCAAACACATTTTCATGGCTCTTGCAGACATTGGCACTGCCACAGCCTATGGCCCCCCATATCTTCCCACCGCGTGTAACGGGAATAGTGTCGACCAGTTCCCTCCCGGCAACCTTTTTGTAGCGGTGAACGAAGGGTTGTGGGATAACGGTGCTGCCTGCGGTCGACGATATAGATTACGATGTTTGAGCGGCAGAAATCGGCCGTGCAAGACCGACATCATCGAAGTTGAAGTCGTGAACTTTTGCCCTAAGTTTCCATGCCCCTCTTCCTTTCTCATGTCCAAAGAGGCCTTTTCTGCCATCTCTCGCTTCCCCAATGCTAAACTCAACGTCGAATATATTGAGATATAA 387 48.58 MALFFFFFLFFFKHIFMALADIGTATAYGPPYLPTACNGNSVDQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVEVVNFCPKFPCPSSFLMSKEAFSAISRFPNAKLNVEYIEI 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26710109 26710755 + CcPI632755_08g014930.1 Cco08g1493 185967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1493 128 Gene3D - 21 128 IPR036908 -
Cco08g1493 128 SMART dpbb_1 52 125 IPR007112 -
Cco08g1493 128 Pfam Lytic transglycolase 53 125 IPR009009 -
Cco08g1493 128 CDD DPBB_EG45-like 21 125 - -
Cco08g1493 128 SUPERFAMILY Barwin-like endoglucanases 8 125 IPR036908 -
Cco08g1493 128 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 126 - -
Cco08g1493 128 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 23 128 IPR007112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1493 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1280 Cco-Chr7:26834029 Cco08g1493 Cco-Chr8:26710109 1.20E-18 dispersed
Cco08g1493 Cco-Chr8:26710109 Cco11g0299 Cco-Chr11:2993418 8.50E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g462 Blo01g01381 . Bda01g00739 Bda03g00066 . . . . Cmo05g00387 . . Cma05g00388 . . Sed01g1369 . . Bhi04g00975 Tan02g2713 Cmetu03g1797 . Hepe10g0261 . Lcy13g1780 . . . . . . . . . . . . . . Cme03g01622 . . . . . . . . . . . . . . Car05g00329 Cpe11g00332 . . . . . . . . Cla08g01325 Cam08g1787 Cec08g1365 Cco08g1493 Clacu08g1481 . Cre08g1270 . . Chy03g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36