Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1501 ATGGGAGAAACAAGGGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTAAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGAAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCTACTGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCGATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACATGCCATCATAG 1284 43.15 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26752415 26756810 - CcPI632755_08g015010.1 Cco08g1501 185975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1501 427 SMART helicmild6 302 383 IPR001650 -
Cco08g1501 427 Gene3D - 42 258 IPR027417 -
Cco08g1501 427 MobiDBLite consensus disorder prediction 1 29 - -
Cco08g1501 427 CDD DEADc_DDX39 45 252 - -
Cco08g1501 427 SMART ultradead3 65 266 IPR014001 -
Cco08g1501 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cco08g1501 427 CDD SF2_C_DEAD 263 392 - -
Cco08g1501 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cco08g1501 427 MobiDBLite consensus disorder prediction 1 22 - -
Cco08g1501 427 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Cco08g1501 427 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Cco08g1501 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Cco08g1501 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cco08g1501 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco08g1501 427 Gene3D - 259 426 IPR027417 -
Cco08g1501 427 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Cco08g1501 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1501 Cco-Chr8:26752415 Cco09g0073 Cco-Chr9:627065 4.50E-62 dispersed
Cco08g1501 Cco-Chr8:26752415 Cco07g1466 Cco-Chr7:28775908 9.00E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1501 K12812 - csv:101217346 837.41