Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1501 | ATGGGAGAAACAAGGGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTAAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGAAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCTACTGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCGATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACATGCCATCATAG | 1284 | 43.15 | MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26752415 | 26756810 | - | CcPI632755_08g015010.1 | Cco08g1501 | 185975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1501 | 427 | SMART | helicmild6 | 302 | 383 | IPR001650 | - | |
Cco08g1501 | 427 | Gene3D | - | 42 | 258 | IPR027417 | - | |
Cco08g1501 | 427 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cco08g1501 | 427 | CDD | DEADc_DDX39 | 45 | 252 | - | - | |
Cco08g1501 | 427 | SMART | ultradead3 | 65 | 266 | IPR014001 | - | |
Cco08g1501 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 278 | 423 | IPR001650 | - | |
Cco08g1501 | 427 | CDD | SF2_C_DEAD | 263 | 392 | - | - | |
Cco08g1501 | 427 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 394 | IPR027417 | - | |
Cco08g1501 | 427 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cco08g1501 | 427 | FunFam | DEAD-box ATP-dependent RNA helicase | 259 | 427 | - | - | |
Cco08g1501 | 427 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 34 | 252 | - | - | |
Cco08g1501 | 427 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724(InterPro) | |
Cco08g1501 | 427 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 46 | 410 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Cco08g1501 | 427 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cco08g1501 | 427 | Gene3D | - | 259 | 426 | IPR027417 | - | |
Cco08g1501 | 427 | Pfam | Helicase conserved C-terminal domain | 275 | 383 | IPR001650 | - | |
Cco08g1501 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1501 | Cco-Chr8:26752415 | Cco09g0073 | Cco-Chr9:627065 | 4.50E-62 | dispersed | |
Cco08g1501 | Cco-Chr8:26752415 | Cco07g1466 | Cco-Chr7:28775908 | 9.00E-63 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1501 | K12812 | - | csv:101217346 | 837.41 |