Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1502 ATGGGATCGGAAGAAAGTGAAAAGATAGTGGTAACTCAGGTAAGCTTTGGTGGATTTGACAGTGATGTTAAAGCAAGAGATCTTATGAGATATCTCGAATCCGAGATTGGGCTTGTGGACAGATGTAGATTGAAAACTTCTTGGACTCCTCCAGAATCGTACCCAGATTTTGACGTCAGTAATGTTGCTGATGTTATAAAATCTGATGATTACAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGCCTCACCTGACTCTGCAGCTGCAGCTCTACATGCTGCAGGTTGTAGTGAGCTATTTTTGAACAATAAATTGTTGAAGGCGAGTTTGGGGCCCGAGAGTCCTTACCATGTAAATCAGAGGCGGAGGACTAAGGTTCCCTTTAAGTTATCTGATGTGCAAGTTGATATAGGGAATGTAACTTGTCAAGACGGGTTTTCGGTTGCTTGGAGAGGACTTTCAAGTGGAATGGATTTTCTAGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAAGGATACTGCATTTTCTTTTAAAGATGACAACAAGCATACAGTGTTGAAGTGTGATTACAAAGTACAGTTCTTGGTGAGGGACATTGATCAGATCAAAAGATATACTGATATGTCATGTTATGTTATTCTCTTGCAACTGACTTCGTCACCCTGCATTTGGTATAGAACTGCAGATGATGATATTGCCAAATCAGTTCCATATGATTTGTTGGATGATGATGATCCATGGATCCGGACAACAGATTTCACGATTAGTGGAGCTATTGGTCGTTGTCATACTTACAGAGTTTCAGTCCCACCCCGCTATGGTATCAAGCTGAACAATGCCATGAATTATTTAAAAGAACAAAGAGTGCACCAGGCCTCCCTCAACCGGCCTCCCAAGATCCTGAATGAACCAGATTATGGAGTTCAAATGACTGATCACTTCTTTTGCATCCATTATAAAGAAGACATATCCTTTGAGATATTATTTCTAATAAATGCCGTAATGCACAAAGGGATAATCAACCAGCACCAAATGTCTGATAGATTCTTTGATTTGCTAAGAAACCAGCCAAATGAAGTTAATTTGGCTGCTTTAAGTCATATTCATGCTTATAGACATCCTGTACTGGATGCTTGTAAGAGGCTAAAACTTGTACAAGAATGGTTGTTGAAGAACCCTAGGATTTGGAAAAGATCTAAAGAGCTGGTTGATATCATTGAAATAAGGAGATTAGTAATAACTCCATCAAAAGCATATTGCTTTCCACCTGAAGTTGAACTCTCCAATAGGGTTTTGAGAAGATTTAAGGATGTTGCTGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCGCATGTTTATACCTATAATGTTGCCCCTATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAAACTAAAATATTTGGAAGGATGAAACACATTCTGAAACATGGGTTTCATTTGTGTGGTAGGAAATACTCCTTTTTGGCATATTCGTCCAACCAACTGAGGGACCAATCAGCTTGGTTTTTTTCTGAATTAAAAGATGTGAAGGTTGATAGTATTATACGTTGGATGGGGAGATTTAAAAATAGAAATGTTGCGAAGTGTGCTGCTAGAATTGGTCAGTGCTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACGATCTTCCTGATATCAAGAGGAATGGATATGTTTTCTCTGATGGGATTGGTACCATCACTCCTGATCTTGCGCAGGAAGTTGCAGACAAATTAAAAATGGATGGGAGCCCACCATGTGCTTACCAAATTAGATATGCAGGTTGCAAAGGTGTTGTTGCCGCTTGGCCATCCAAGGGTGACGGGATCAGACTTGCTTTAAGGCCAAGCATGAATAAATTTCAATCGGAACATAGAATCTTGGAGATCTGTTCATGGAGTAGATTCCAGCCAGGTTTTCTTAATAGGCAGATCATAACCCTACTTTCTACACTAAGTGTTCCTGATGAAATTTTCTGGAGTATGCAGGAGACTATGGTTTCAAAACTGGATAGAATGATCACCGATACAGAGGTGGCATTTGATGTTCTCACTGCATCCTGTGCTGAGCAAGGAAATGCAGCGGCAATTATGTTGAGTGCTGGTTTTGAACCTCGAACAGAACCTCATTTAAGGGGCATGCTACTGTGTATAAGAGCAGCGCAGCTCTGGGGCCTTCGGGAAAAAGCTAGGATCTTTGTTACTGAGGGGAGGTGGTGTATGGGGTGTTTCGATGAGAGTGGCGTGTTACAAGAAGGCCAATGCTTCATCCAAGTATCCACTCCATTGCTTGAGAAGTGTTTCTCCAAGCATGGGTCTCTCTTTGCTGAGACAAAGAATAATCTTACTGTGGTAAGAGGGACTGTAGTCATAGCCAAAAATCCGTGCCTTCATCCGGGAGATGTGAGAATTCTTGAAGCAGTTGATGCTCCCGAGTTGCATCATATGTACGATTGCCTTGTGTTTCCTCAAAATGGTGAACGACCCCATACAAATGAAGCTTCTGGAAGTGATTTGGATGGGGATCTCTACTTTATTACTTGGGATGAAAATCTTATTCCACCCAGTAAAAAAAGTTGGCCACCTATGGAGTATGCTCCAGCAGAAGTAAAGACTCTTACACGTGATGTTACTAAATGGGATATAATGGAGTTCTTTGCAAAAAATATGATCAATGAGAGTCTAGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGCGAGTATGGAGCTTTGGATGAGAACTGCATTCAATTATCTGAATTAGCTGCCACAGCAGTTGATTTCCCCAAGACAGGGAAGATTGTGACCATGCCTCCCCATCTGAAACCAAAACTATATCCAGATTTTATGGGAAAAGAAGCTACTCAATCATACAAGTCCACCAAAATTCTGGGAAGAATGTACCGCCGAATTAGAGATGCGTATGATGATGATATGATCACATCATGTGAGCTAAATTTTACTCTTCACGATGTCCGTTATGATGTAGATCTTGAAGTTGCAGGAGCAGAAGATTTCATCACAGAAGCATGGAATCAAAAGTGCTCGTACGACGCTCAGCTGAGTGGTTTACTAGGACAATATAAAGTTAATAGGGAAGAAGAGATTGTCACTGGGCATATTTGGTCCATGCCAAAGTACAGTAGCAGGAAGCAAGGAGAGCTGAAGGAGAAGCTTAAGCATTCTTATACCACTCTTAAGAAAGAGTTCAGGCAAGTTTTTGAGAATATTGGCCCAGAGTTTCAGCAACTCACTGATGATGAAAGGAATGCATTGTTCGAAAGAAAGGCATCTGCCTGGTATCAGGTGGCATACCATCCAACTTGGTTGAAGAAATCAATGGAGTTGCGAGAACCGGACATTCCTGAGACCGTCCCAATGTTAAGCTTTCCTTGGATTGCTGCCGATTATCTTGCACGGATCAAGATCAAGTGCAGGCGGATGAAAAGTTTCGACCCAACAAAGCCGATTAACTCTTTGGCGAGTTATCTTTCTGATCGAATGAAGAAGAAAAACTCTAAAATAGATGGAGGAATATCCGAGTTTTCCTGTTTGTTCGACGCATTTTCCGGGAAAAGCTGGGATCCTTTTCTATTTCAACTCTGTTGCAAGAGACAAATGCCGCGCTTACTTCATGGGACGCTTCATGCCGATATATATGGAATCGACAGGCTTCAAACTGGATGTCCTATTTTCTGCGGGAAGGATAAAAGGATTGTTGGATCTCAAATGTATGCAACAGTTGATCTTGATAAGGCCAGAGTTGGCCGGACGAGGATAGTAGATCAGCCATACGCTCCTGAATGGAACGATCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGGTGTAATCGGTGCAACATTGATTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATTTGTATATGAGAAATGGGTTGAAATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAGAATCCATGTAAAGTTACAATTTTCAAGTGTTAATGAAGACAGGAACTGGTCCCGAGGAATTCCAGATCCTTTCGGTGGTGTACCTTTCACATTCTTCAACCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTCCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACATAGGTGTTGGGAGGACATATTTGATGCAATTAGCAATGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATAAGAGACCGAGAAAGAAGACAGACAGGAGAGGATATTACTCTGGGGCAACTGCTAAAGAAGAAGGCAGACGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCTACTGAAGAGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAAGGGCTCGAAGGTACATTGCGTTCTGTGTCCACGGAATCCTGACGTTGGTAGAAGTATCATTCAGGGGTTTGAGACTGCTACAATGTTTACTCATCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGAGAAAAGAAGGATCGTGAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACCGAAGCACCCTTTATTTTCAACTCTAGATTCAATCCACTATACCGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATTAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCTGCCTAGAAGGACCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTTGGAAACAACTTGTTGATTCCAATGCAAAAGCTTGAAGAAACCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACATGGAATGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGTTGGCTTTCCAGAGATACCTGAGGATGCATCCAAAGTAGGCCTTGTAAGTGGGAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAATTTCATATACATTGAGAATCAATATTTCCTTGGAAGCTCTTATGGTTGGAAATCAAATGGTATAAGGGTAGAAGAAATCAATGCTTTGCATCTTATTCCAAAGGAGATCTCACTGAAGATTGTGAGCAAGATCGAAGCTGGAGAGAGATTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCCGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTAGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTCGATGCAAATCCTAAAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATGTACCACCGGAGAAGCCAGAACCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTTATGATCTATGTTCATTCAAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCTCATCACTTGGCATCTGGTGAGCCTGCAAGAGGTCAAATCTATGGCTTCAGAGTGGCTCTATGGTACGAGCATCTCGGTCTGTTTGACAAAGCCTTCCATAACCCAGAGAGTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCTAGAGAACTGGCAATTTTACTCAGACGATACCTTTGATGGCGATCTTCCTGGCCATCTGCTTTCCTACCCCATTGAAGTAGGTCCCAACGGATCGGTTACGGCGCTGCCAAAGTTTGAATTTTTCCCTGACACCAAGGCTCGTGTTCTTGGGCAACTAGCCGAGTACATTCGTCATTCAATGGTTTTGTTTATTTCGACCCTTATAAAATCTGCCCAATCTTCTACTGTGGACCGTCTGGACATTATTCGAAGGCTTCTCTCCTTCGCGGTGTTTTTCAACGTCTGCTCTTCTTCGGATAATTTAGCTTGGAGACGCGTAAATGCATTATCCAGGGAATATTTGGTTTCCGTTCTAACAGATTATAACACGAATGAGAGAAGAAGCTGTCATGGATGCTGCACTGCATCTGCACTAGGTAATGCAATGGATGGGCCGTCTAAAGGTCTGAGAGTAAAAGACCAAGAAGCAAAGAAACAATGCTTACCAGAAAATTGCCCGAGCTCTAGCACATGTGAAATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGCCATCAGCCCAGTCACAAGATTCTCACAGCAATATTGGGAGCAGTACAGACTTTGTAAACTCTGGACTCCTTCTTTGGAATGAGACCAGGAAGCAATGGGTTGGAAATAAAATGTCCGAGAGCCAAAAGCAAGTTCAAGAACCCAAAATAAGCTGGAATGCTACTTATGACAGCTTATTAACAACAAACAAGCCGTTCCCCGAGCCCATACCTCTTGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA 6726 41.84 MGSEESEKIVVTQVSFGGFDSDVKARDLMRYLESEIGLVDRCRLKTSWTPPESYPDFDVSNVADVIKSDDYKKVVPHAFVHFASPDSAAAALHAAGCSELFLNNKLLKASLGPESPYHVNQRRRTKVPFKLSDVQVDIGNVTCQDGFSVAWRGLSSGMDFLVDPFDGTCKFCFTKDTAFSFKDDNKHTVLKCDYKVQFLVRDIDQIKRYTDMSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCHTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLNRPPKILNEPDYGVQMTDHFFCIHYKEDISFEILFLINAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAYRHPVLDACKRLKLVQEWLLKNPRIWKRSKELVDIIEIRRLVITPSKAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYNVAPIVKEITSSSFPQKTKIFGRMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFSELKDVKVDSIIRWMGRFKNRNVAKCAARIGQCFSSTYATIEVPRNMVNHDLPDIKRNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGCKGVVAAWPSKGDGIRLALRPSMNKFQSEHRILEICSWSRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMVSKLDRMITDTEVAFDVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLLCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHMYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSKKSWPPMEYAPAEVKTLTRDVTKWDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGRMYRRIRDAYDDDMITSCELNFTLHDVRYDVDLEVAGAEDFITEAWNQKCSYDAQLSGLLGQYKVNREEEIVTGHIWSMPKYSSRKQGELKEKLKHSYTTLKKEFRQVFENIGPEFQQLTDDERNALFERKASAWYQVAYHPTWLKKSMELREPDIPETVPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLASYLSDRMKKKNSKIDGGISEFSCLFDAFSGKSWDPFLFQLCCKRQMPRLLHGTLHADIYGIDRLQTGCPIFCGKDKRIVGSQMYATVDLDKARVGRTRIVDQPYAPEWNDHFRIYCAHTVSHIIFTVKDGGVIGATLIGRAYVPVEDIIKGFVYEKWVEILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGIPDPFGGVPFTFFNQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGEDITLGQLLKKKADEGVTVLLLVWDDRTSTEEFKRDGLMATHDQETAEYFKGSKVHCVLCPRNPDVGRSIIQGFETATMFTHHQKTVVLDSEIAGGGTEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYTDFHQPNFSGSSIRKGGPREPWHDIHCCLEGPVAWDILYNFEQRWRKQVGNNLLIPMQKLEETITRPVMVLPADDPDTWNVQIFRSIDGGAVVGFPEIPEDASKVGLVSGKNNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSNGIRVEEINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDANPKDYLTFFCLGNREKKRTGEYVPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKAFHNPESEDCIQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSVTALPKFEFFPDTKARVLGQLAEYIRHSMVLFISTLIKSAQSSTVDRLDIIRRLLSFAVFFNVCSSSDNLAWRRVNALSREYLVSVLTDYNTNERRSCHGCCTASALGNAMDGPSKGLRVKDQEAKKQCLPENCPSSSTCEMDNSTVWSQRSMPSAQSQDSHSNIGSSTDFVNSGLLLWNETRKQWVGNKMSESQKQVQEPKISWNATYDSLLTTNKPFPEPIPLAEMIEFLVDVWEQEGLYD 2241
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26761848 26774511 + CcPI632755_08g015020.1 Cco08g1502 185976
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1502 2241 SUPERFAMILY Phospholipase D/nuclease 1703 1958 - -
Cco08g1502 2241 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1267 1372 IPR035892 -
Cco08g1502 2241 SUPERFAMILY Phospholipase D/nuclease 1386 1663 - -
Cco08g1502 2241 Gene3D Endonuclease Chain A 1423 1671 - -
Cco08g1502 2241 CDD C2_plant_PLD 1235 1369 - -
Cco08g1502 2241 Pfam Gag1-like, clamp domain 2136 2241 IPR025124 -
Cco08g1502 2241 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1875 1902 IPR001736 GO:0003824(InterPro)
Cco08g1502 2241 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1547 1585 IPR001736 GO:0003824(InterPro)
Cco08g1502 2241 Pfam C2 domain 1270 1348 IPR000008 -
Cco08g1502 2241 Gene3D Endonuclease Chain A 1691 1919 - -
Cco08g1502 2241 ProSiteProfiles C2 domain profile. 1223 1347 IPR000008 -
Cco08g1502 2241 Pfam Phospholipase D Active site motif 1877 1902 IPR001736 GO:0003824(InterPro)
Cco08g1502 2241 FunFam Phospholipase D 1688 1921 - -
Cco08g1502 2241 Pfam Phospholipase D C terminal 1947 2018 IPR024632 -
Cco08g1502 2241 PANTHER RNA-DEPENDENT RNA POLYMERASE 13 1462 IPR007855 GO:0003968(InterPro)|GO:0003968(PANTHER)|GO:0030422(PANTHER)|GO:0031380(PANTHER)
Cco08g1502 2241 Gene3D C2 domain 1241 1380 IPR035892 -
Cco08g1502 2241 SMART pld_4 1875 1902 IPR001736 GO:0003824(InterPro)
Cco08g1502 2241 SMART pld_4 1547 1585 IPR001736 GO:0003824(InterPro)
Cco08g1502 2241 FunFam Phospholipase D delta 1422 1666 - -
Cco08g1502 2241 SMART C2_3c 1242 1346 IPR000008 -
Cco08g1502 2241 Pfam RNA dependent RNA polymerase 417 999 IPR007855 GO:0003968(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1294 Cco-Chr6:23158049 Cco08g1502 Cco-Chr8:26761848 5.00E-40 dispersed
Cco07g0571 Cco-Chr7:7595135 Cco08g1502 Cco-Chr8:26761848 3.50E-165 dispersed
Cco07g0573 Cco-Chr7:7665716 Cco08g1502 Cco-Chr8:26761848 2.70E-159 dispersed
Cco07g1343 Cco-Chr7:27531667 Cco08g1502 Cco-Chr8:26761848 0.00E+00 dispersed
Cco08g0920 Cco-Chr8:21111377 Cco08g1502 Cco-Chr8:26761848 1.30E-19 dispersed
Cco08g1502 Cco-Chr8:26761848 Cco08g1583 Cco-Chr8:27393193 8.30E-200 dispersed
Cco01g0675 Cco-Chr1:7049722 Cco08g1502 Cco-Chr8:26761848 6.90E-60 transposed
Cco01g0676 Cco-Chr1:7051179 Cco08g1502 Cco-Chr8:26761848 3.20E-31 transposed
Cco01g0691 Cco-Chr1:7179249 Cco08g1502 Cco-Chr8:26761848 2.80E-164 transposed
Cco06g1889 Cco-Chr6:29081873 Cco08g1502 Cco-Chr8:26761848 4.90E-153 transposed
Cco11g0326 Cco-Chr11:3274988 Cco08g1502 Cco-Chr8:26761848 5.30E-16 wgd
Cco07g1341 Cco-Chr7:27513859 Cco08g1502 Cco-Chr8:26761848 1.90E-16 wgd
Cco08g1502 Cco-Chr8:26761848 Cco09g0271 Cco-Chr9:2413920 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1502 K11699 - csv:101217108 2264.19