Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1503 ATGCATCTGCTCTTTTCACCTGAAAACTTGGTGATTGCCGTCTTCACCTGTATTGGGTCTCTCTTTTTTCCTCTCTTTGGAGGGTTTTTCCGTGGAGTTCTGCCCATAGTTGAATTTTTGGGTTTCGTCAACCCCTACCCATGGCTAAGATCTTTGGTTTTACTCACTACTATCTTTAACTACTGTGCTTTATCAGATCTCACAGAAAGTGAGGATTTTTTCCCTGGGGCACCAATCTATCCAAACCCCAAGGATACTAGTCCCTTTTTGTCCCTTGGTCGTCATGTGGATGTTTGTTATCCTCTCCGTAAGAGGTCCAGAGTCAGTGCCCCATTTGTGCCTAGTGGAGAAATACTCAAAAAGGAGGAGGCATCTATTGAAGTTCTTCCAGACGAGTGCCTCTTTGAGATCTTCAGATGCCTGCCTGATAGAGAGACGAGGAGCCTCTGCGCTTGCGTTTCTAAACGCTGGCTCATGCTTTTAAGCAGTATAAGTGGAAACGAATTTTACAGTGCTTCCAAAAATTTGAAGCCTAAGAATGTTGTGACTGAAAACGAGAAAGATAACCTAACTGAGAACGATGGATGTCTTTCACGAAATTTAGAAGGGAAAAAGGCAACAGATGTAAGACTAGCTGCCATAGCAGTAGGAATTGCTAGTTGTGGTGGCTTGGGCAAGTTGTCAATTCGTGGAGGCAATCATGGTTCCGAGGTTACAAACCTTGGCCTTAAGGCTGTTGCGCATGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATCTGTCTTCAATAGGTGATGAAGGTCTGATTGAGATTGCCAAGGGATGTCAACTCCTAGAGAAGCTTGATTTATGCCATTGCCCTGGAATCTCAAACAAAGCTTTGCTGGAACTTGCCAAAAACTGCGCTAATCTGACTGCTATAACAATAGAGTCTTGTCTAAACATTGGCAATGAAAGCATTCAAGCTATTGGGAAATATTGTTCGAATCTGAAGTCCCTTTCAATCAGAGACTGCCCCCTTATTGGGGATCAAGGAATAGTTAGCATGTTCACTTCCACCTCATACACCTTAAATAAGGTGAAGCTCCAGGGTCTAAATGTCACTGATGTGTCGCTTGCTGTCATTGGCCATTACGGAAGGGCAGTTACAGACCTTATGCTTACTGGCCTGACAAATGTTTCTGAGAGGGGATTTTGGGCCATGGGCAATGGTCATGGTTTGCAAAAGTTGAGATCATTAACACTTGCTTCTTGCCATGGTGTGACTGACGTTGGGCTTCAATCGATTGGAAAGGGATGCCCAAACTTGAGGAAGTTCTGCTTGCGCAAATGTTCATTTTTGTCCGACAATGGAATGGTGTCTTTTGCTCAGGCTGCTACCTCCATTGATAACTTACAATTAGAAGAGTGCCACAGGATAACCCAATTGGGTTTATTTGGTACCATCTTAAACTGTGGTGCAAAGTTAAAGGCCCTTTCTCTAGTAAACTGCTTAGGGATCAAGGATTCGAGCCTGAACTTGCCTTCTCCGTCACCTTGCAAATCTCTGCAGTCATTATCCATCCGCAGTTGCCCTGGGTTTGGTAATGTAAGTTTAACTCTTCTGAGCAAGCTGTGCCCCCAGCTTCAGCATGTGGATTTATCTGGGCTCAATGGTATTACAGATTCTGGGCTTCTGCCGTTGCTTACAAATTGTAAAGCAGGATTGGTGAAGGTCAATCTAAGTGGCTGTGTGAATCTAACCGACAAAGTGATTTCATCCTTGACCAAGCTTCATGGTTGGACTCTTGAATTGCTCAATCTTGATGGTTGTTTGAAGGTCACCGATTCAAGCTTGGTGGCAATTGCAGAGAACTGTCCGTTGCTCAATGATCTCGACGTCTCCAAGTGTTGTATAACTGATTTTGGGGTTGCAGCGCTTGCTCAAGCCAACCAGTTCAACCTGCAGATCCTTTCTGTGTTTGGGTGCTCTGCCTTAACCGACCAGAGCTTGCTCGCTCTTGTAAAATTGGGCGACTCCCTCTTGGGCTTGAATCTTCAGCACTGCAACTCAATCAGCACCAGAAGTATTGAGCTGCTATTGGCTCAACTCCATCGGGAATATGGTCATTCTCTCCTTTTTCACAGATCTCCCTTGAATGGGGGTCTGTTTTTAGTGTTTTGGCTCTCACATGAGATGTCTCTCACTTTGATAGATGGCCATCCTTCCCTGAGCTCCATTTTCTGGATCAAGGTTATTAGGTTGTGTTATTCGGGTAATCGGTATCTCGGTTTTTTGTCCTGCTCGTCCCAGGTGGGATTATCTCAGGGGGTAGGGGTTTATGATCGCCTAGACAAATCATCTTCCTGGTTGCTTTTAGCAGTTCCTATATTTGGTGCCTTTCCATTCACGGGGCCTCGGTCGTGGCAGCAGGCCGGGAAGACGGTCATTTCACGTCTCAACAAGCCATTCACTTCACGTTCCATTCCCAACCACCGTCTGATTACAGATGGGGCACTCATTCACAACTGGATTGTAAAGTTTTTACCTGTGGAATCTCCCAAGCCCATCCCATAA 2559 45.13 MHLLFSPENLVIAVFTCIGSLFFPLFGGFFRGVLPIVEFLGFVNPYPWLRSLVLLTTIFNYCALSDLTESEDFFPGAPIYPNPKDTSPFLSLGRHVDVCYPLRKRSRVSAPFVPSGEILKKEEASIEVLPDECLFEIFRCLPDRETRSLCACVSKRWLMLLSSISGNEFYSASKNLKPKNVVTENEKDNLTENDGCLSRNLEGKKATDVRLAAIAVGIASCGGLGKLSIRGGNHGSEVTNLGLKAVAHGCPSLKAISLWNLSSIGDEGLIEIAKGCQLLEKLDLCHCPGISNKALLELAKNCANLTAITIESCLNIGNESIQAIGKYCSNLKSLSIRDCPLIGDQGIVSMFTSTSYTLNKVKLQGLNVTDVSLAVIGHYGRAVTDLMLTGLTNVSERGFWAMGNGHGLQKLRSLTLASCHGVTDVGLQSIGKGCPNLRKFCLRKCSFLSDNGMVSFAQAATSIDNLQLEECHRITQLGLFGTILNCGAKLKALSLVNCLGIKDSSLNLPSPSPCKSLQSLSIRSCPGFGNVSLTLLSKLCPQLQHVDLSGLNGITDSGLLPLLTNCKAGLVKVNLSGCVNLTDKVISSLTKLHGWTLELLNLDGCLKVTDSSLVAIAENCPLLNDLDVSKCCITDFGVAALAQANQFNLQILSVFGCSALTDQSLLALVKLGDSLLGLNLQHCNSISTRSIELLLAQLHREYGHSLLFHRSPLNGGLFLVFWLSHEMSLTLIDGHPSLSSIFWIKVIRLCYSGNRYLGFLSCSSQVGLSQGVGVYDRLDKSSSWLLLAVPIFGAFPFTGPRSWQQAGKTVISRLNKPFTSRSIPNHRLITDGALIHNWIVKFLPVESPKPIP 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26784146 26789290 + CcPI632755_08g015030.1 Cco08g1503 185977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1503 852 PANTHER UNCHARACTERIZED 513 643 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Cco08g1503 852 FunFam EIN3-binding F-box protein 1 566 702 - -
Cco08g1503 852 Pfam F-box-like 126 162 IPR001810 GO:0005515(InterPro)
Cco08g1503 852 Gene3D Ribonuclease Inhibitor 510 563 IPR032675 -
Cco08g1503 852 Gene3D Ribonuclease Inhibitor 564 627 IPR032675 -
Cco08g1503 852 Gene3D Ribonuclease Inhibitor 628 700 IPR032675 -
Cco08g1503 852 CDD F-box_AtTIR1-like 126 163 - -
Cco08g1503 852 SUPERFAMILY RNI-like 221 478 - -
Cco08g1503 852 SUPERFAMILY RNI-like 363 702 - -
Cco08g1503 852 SMART LRR_CC_2 276 301 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 567 592 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 646 671 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 487 512 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 620 644 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 302 327 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 434 459 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 328 353 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 540 565 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 250 275 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 514 539 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 594 619 IPR006553 -
Cco08g1503 852 SMART LRR_CC_2 408 433 IPR006553 -
Cco08g1503 852 SUPERFAMILY F-box domain 123 163 IPR036047 GO:0005515(InterPro)
Cco08g1503 852 FunFam EIN3-binding F-box protein 1 196 314 - -
Cco08g1503 852 FunFam EIN3-binding F-box protein 1 315 505 - -
Cco08g1503 852 Pfam Leucine Rich repeat 620 642 IPR001611 GO:0005515(InterPro)
Cco08g1503 852 Pfam Leucine Rich repeat 327 349 IPR001611 GO:0005515(InterPro)
Cco08g1503 852 Pfam Leucine Rich repeat 409 430 IPR001611 GO:0005515(InterPro)
Cco08g1503 852 Gene3D Ribonuclease Inhibitor 353 509 IPR032675 -
Cco08g1503 852 Gene3D Ribonuclease Inhibitor 120 352 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1503 K14515 - - csv:101216639 1162.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1295 Cco-Chr6:23184887 Cco08g1503 Cco-Chr8:26784146 6.10E-87 dispersed
Cco11g0327 Cco-Chr11:3289654 Cco08g1503 Cco-Chr8:26784146 1.20E-117 wgd
Cco05g1927 Cco-Chr5:28365755 Cco08g1503 Cco-Chr8:26784146 8.80E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28