Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1504 ATGACTTCCACCTTCTACAACCCTGCGCCGGCGTGCAACGCCGCTGTTGTTTCTTCTTCGTTTCTCAGATTCAAGTTCATACCGAAATTTCCCGCCATCATACCTTTATCGTCTCTTTCGACGGTCCCGCTTCGCGCCAAAACTACCGTTAACTGTTCTCTTCCCGCCCATGGCGATGCTTCTGTTCAGACTGATTTCTGCTTCCTGAAGAGGAGGGAATTTGTCTTTTCCGCCGCGCTGCCATTTCTTCTTAGTTTGCATGAATCCGTGGAAGGTTTTAAAGCTGAGGCTGGAGAAAGGTTGGATAAAAGGGAAGTTGAACGGATAAGAGAAGAAGTAAGAAAGGTGGTAACCAAAGGCAGGGCTCCTGGTCTGCTTCGTCTGGTATTTCATGATGCTGGAACTTTTGAAACTAATGATACTTCAGGTGGTATGAACGGATCTATCATTCACGAACTTGATAGACCTGAAAACAGAGGTCTGAAGAAATCAGTTAAGATTCTTGAGGAAGCAAAGAGTACACTGAATTTAATTAGACCAGTATCTTGGGCAGACGTGATAGCAGTGGCTGGCGCTGAAGCAGTTTCAATATGTGGAGGTCCGAGTATTGCTGTTGAGTTGGGTAGATTAGACTCAGAGAAGCCAGATCCAGAAGGTAAACTTCCTGAAGAATCTCTGGATGCTGTTGGATTGAAGCAAATCTTCAGCAGAAAAGGATTCACGACACGAGAACTAGTTGCTCTATCTGGAGCCCATACTATTGGTGGCAAAGGTTTTGGAAGCCCTGTTGTTTTTGATAATGCATATTTCAAAATCCTTTTGGAGAAGCCATGGTCGTCTAACGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCGTGCTCTTGCTGACGATGATGAATGCTTAAGATGGATCAAAGAGTATGCCAACGATCAGAATGTGTTCTTCGAAGATTTCCAAAATGCTTATACCAAGCTAGTAAATTCTGGTGCAAAGTGGAAAAGCTAG 1011 44.51 MTSTFYNPAPACNAAVVSSSFLRFKFIPKFPAIIPLSSLSTVPLRAKTTVNCSLPAHGDASVQTDFCFLKRREFVFSAALPFLLSLHESVEGFKAEAGERLDKREVERIREEVRKVVTKGRAPGLLRLVFHDAGTFETNDTSGGMNGSIIHELDRPENRGLKKSVKILEEAKSTLNLIRPVSWADVIAVAGAEAVSICGGPSIAVELGRLDSEKPDPEGKLPEESLDAVGLKQIFSRKGFTTRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSNGGMSSMIGLPSDRALADDDECLRWIKEYANDQNVFFEDFQNAYTKLVNSGAKWKS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26789672 26793183 - CcPI632755_08g015040.1 Cco08g1504 185978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1504 336 PRINTS Haem peroxidase superfamily signature 199 211 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Haem peroxidase superfamily signature 122 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Haem peroxidase superfamily signature 181 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 FunFam L-ascorbate peroxidase 112 228 - -
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 308 332 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 102 122 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 238 259 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 220 237 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 140 150 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 180 198 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PRINTS Plant ascorbate peroxidase signature 199 211 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 244 254 IPR019793 -
Cco08g1504 336 SUPERFAMILY Heme-dependent peroxidases 115 333 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 ProSiteProfiles Plant heme peroxidase family profile. 122 336 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1504 336 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 102 331 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cco08g1504 336 ProSitePatterns Peroxidases active site signature. 122 133 IPR019794 GO:0004601(InterPro)
Cco08g1504 336 Gene3D Peroxidase, domain 2 222 324 - -
Cco08g1504 336 FunFam Adenylate/guanylate cyclase 222 324 - -
Cco08g1504 336 Gene3D - 110 331 - -
Cco08g1504 336 Pfam Peroxidase 110 312 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1504 K00434 - - csv:101216396 607.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0718 Cco-Chr8:18755330 Cco08g1504 Cco-Chr8:26789672 9.10E-29 dispersed
Cco08g1504 Cco-Chr8:26789672 Cco03g0025 Cco-Chr3:278377 2.00E-17 dispersed
Cco08g1504 Cco-Chr8:26789672 Cco04g1813 Cco-Chr4:33006412 2.80E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37