Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1527 ATGGCTTTTCGTAACCAGCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCAGTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCGACTTTGTCGCGTGAATCGGATGATTTTAAGAACAACAGCAGCGGCGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTTGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGATTGAAAGCATTGAAATTGGAAATCATCGTCTGCTTTGGGGATCATCAGCAAGGTTGA 1425 48.63 MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADQSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDFKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRLKALKLEIIVCFGDHQQG 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26915636 26919818 - CcPI632755_08g015270.1 Cco08g1527 186001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1527 474 SMART KNOX1_2 191 235 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco08g1527 474 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Cco08g1527 474 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco08g1527 474 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 176 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g1527 474 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco08g1527 474 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Cco08g1527 474 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Cco08g1527 474 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Cco08g1527 474 MobiDBLite consensus disorder prediction 147 162 - -
Cco08g1527 474 MobiDBLite consensus disorder prediction 11 60 - -
Cco08g1527 474 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco08g1527 474 Gene3D - 380 441 - -
Cco08g1527 474 MobiDBLite consensus disorder prediction 147 183 - -
Cco08g1527 474 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Cco08g1527 474 MobiDBLite consensus disorder prediction 1 60 - -
Cco08g1527 474 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Cco08g1527 474 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
Cco08g1527 474 Pfam KNOX2 domain 252 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco08g1527 474 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0332 Cco-Chr1:3249957 Cco08g1527 Cco-Chr8:26915636 9.60E-104 dispersed
Cco08g1527 Cco-Chr8:26915636 Cco08g1861 Cco-Chr8:29647500 5.90E-23 dispersed
Cco05g1891 Cco-Chr5:27967000 Cco08g1527 Cco-Chr8:26915636 5.80E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59820 PF03791 KNOX2 3.30E-19 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1527 - - - 0.0