Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1527 | ATGGCTTTTCGTAACCAGCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCAGTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCGACTTTGTCGCGTGAATCGGATGATTTTAAGAACAACAGCAGCGGCGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTTGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGATTGAAAGCATTGAAATTGGAAATCATCGTCTGCTTTGGGGATCATCAGCAAGGTTGA | 1425 | 48.63 | MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADQSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDFKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRLKALKLEIIVCFGDHQQG | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26915636 | 26919818 | - | CcPI632755_08g015270.1 | Cco08g1527 | 186001 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1527 | 474 | SMART | KNOX1_2 | 191 | 235 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco08g1527 | 474 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 380 | 441 | - | - | |
Cco08g1527 | 474 | Pfam | KNOX1 domain | 193 | 233 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco08g1527 | 474 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 176 | 441 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco08g1527 | 474 | SMART | KNOX2_2 | 247 | 302 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco08g1527 | 474 | Pfam | ELK domain | 359 | 380 | IPR005539 | GO:0003677(InterPro) | |
Cco08g1527 | 474 | SMART | HOX_1 | 381 | 446 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1527 | 474 | ProSiteProfiles | 'Homeobox' domain profile. | 379 | 442 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1527 | 474 | MobiDBLite | consensus disorder prediction | 147 | 162 | - | - | |
Cco08g1527 | 474 | MobiDBLite | consensus disorder prediction | 11 | 60 | - | - | |
Cco08g1527 | 474 | Pfam | Homeobox KN domain | 399 | 438 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco08g1527 | 474 | Gene3D | - | 380 | 441 | - | - | |
Cco08g1527 | 474 | MobiDBLite | consensus disorder prediction | 147 | 183 | - | - | |
Cco08g1527 | 474 | CDD | homeodomain | 382 | 443 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1527 | 474 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cco08g1527 | 474 | ProSiteProfiles | ELK domain profile. | 359 | 379 | IPR005539 | GO:0003677(InterPro) | |
Cco08g1527 | 474 | SMART | ELK_2 | 359 | 380 | IPR005539 | GO:0003677(InterPro) | |
Cco08g1527 | 474 | Pfam | KNOX2 domain | 252 | 301 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco08g1527 | 474 | SUPERFAMILY | Homeodomain-like | 381 | 445 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0332 | Cco-Chr1:3249957 | Cco08g1527 | Cco-Chr8:26915636 | 9.60E-104 | dispersed | |
Cco08g1527 | Cco-Chr8:26915636 | Cco08g1861 | Cco-Chr8:29647500 | 5.90E-23 | dispersed | |
Cco05g1891 | Cco-Chr5:27967000 | Cco08g1527 | Cco-Chr8:26915636 | 5.80E-182 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59820 | PF03791 | KNOX2 | 3.30E-19 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1527 | - | - | - | 0.0 |