Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1530 ATGTTAATGGGTAGGCTCATTTCAAGCAGGCTTCAAAGTTTTGTTCAAGGAGCTCAAAAAGGCCTTTATGGATCAGCCCATTACATTGTCCCGCCAATAAAATGGGCTAGGCTTTTAATCAACTTGGGGTTGGCAATCGAGCAACATTGGTTTAGCGGTCCACATAAAAAGCTCATATCCTCTTTTGTTGTCTCTGAAATTAGGGTTTCTGCTTCTTGTTCGCCGTTCGTAGCCCTCCCAGCCGGTTCAAGACTCAACAAGATGCCGTCTCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACAATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGTTCAGTTTGGTGCCATTTCTTCTCACGCTAGTTTGGAGTTATATTATGGTCTTGATCATTCAAGTATTCGTGTGAATGAGAGGAGTTATCTTTCTCGGGGAACCACTGCTGCTTGCAACCTTGCAATTGCTATTCTCTTGATTTTTTCCTTTTCGTTGGCCAACGCTGAAAAGCCGTGTAGGCCCATTTCAACCAGGCATTTGCGGATTGGCCCATTTCATTTAAAATGGGCTAGGCTTTTAATCAACTTGGGGTTGCCTAGAACCGAGGCAGCAGCATTGTTTTTCCCACATAAAACTCATCTCCTGTTTAACTCGTACTCTCTGAAATTAGGGTTCCCGCTTCTTGTTCGCTGGTCGTACCCTCGCAGCCGGCTCCCGATTCCCAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGAACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCATTGGCGCCGCACTAAGCTCGGATACCCCTGTATGGATGATTGTATCCTGACGCTTAATAAATTTGCTACCCCAACACAAAGAACAGATCCAACGAGCACTTGTAGTTTGCATCTAAGTCCCTCCTCCGTTAACAAATTGCCCCTCGGAACCATCGCCTTCTCTCCTCCGCCTCCTTCTCTCTGTGGACCTCAATTTCCATTCTCATTGATCCCATTTCCATTAAGATTTAGATGGCGTCCTCTATCCTCCCTCTTGCTTCCGCCTCCCCTTCGGCTTCACGTTCCTCACTTGAAAACAAGAAGGTTTTCTCTACTTTCCGTTTACTATCGCTTTCGTTCTTACGGGAAGTCGAACCTTGGAAGTTGCTGTGTAAGCTTTGATCATGACAAAAACCATCCATTCGCGAAGACGAAGTCCTTGAGCAGGATATCTATGGTTGCTTCAATCAATGTCTCTCGGTTTGAGGGGATAACGATGGCCCCTCCTGATCCAATTCTTGGAGTTTCTGAGGCTTTCAAAGCAGATACGCACGGAAACAAGCTCAACTTGGGAGTTGGTGCCTACCGCACAGAAGAGCTACAACCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGACACTTATGCTGGAGAGGGGAGATAACAAAGAGTATCTCCCAATTGAAGGTCTGGCAGCATTTAATAAGGCGACAGCAGAGTTATTATTTGGAGCTGATAACCCAGTCATTAAGCAGCAACGAGTTGCAACTATTCAAGGTCTGTCAGGGACTGGTTCTCTTAGACTAGCGGCTGCTCTTATAGAACGATACTTCCCTGGTGCAAAAGTTCTTATATCTTCTCCAAGTTGGGGGAATCATAAAAATATTTTCAATGATGCGAGAGTTCCATGGTCTGAGTATCGATATTATGACCCTAAAACAGTTGGTTTGGATTTTGAAGGGATGATGTCTGATATTAAGGCAGCACCTGAAGGATCTTTTGTGCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGACCCAACACCTGAGCAGTGGGAAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATTCCGTTTTTTGATGTTGCATATCAGGGTTTTGCTAGTGGAAGCCTCAATGCAGATGCAGCATCTGTTAGGCTGTTTGCTGCTCGTGGTTTGGAGCTTTTGGTTGCTCAATCCTACAGTAAAAATCTTGGTCTTTATGCTGAAAGGATTGGAGCTATCAATGTCGTCTGCTCATCCACAGATTCAGCAACAAGGGTAAAGAGCCAGTTGAAGAGACTTGCTCGACCAATGTACTCAAATCCACCAGTTCATGGGGCTAGAATTGTTGCTAACATTGTTGGAGATCCAGCACTATTTAACGAGTGGAAAACAGAGATGGAAATGATGGCTGGAAGAATTAAGAATGTTAGACAGAAGCTCTATGATAGTCTCTGTGCAAAAGATAAAAGTGGGAAAGATTGGTCCTTTATACTCAAGCAGATTGGCATGTTCTCATTCACAGGCTTGAGCAAAGTTCAGAGTGATAATATGACGGACAAGTGGCATGTATACATGACGAAGGATGGACGGATATCTTTGGCTGGATTGTCGTTAGCTAAGTGTGAATATCTCGCAGATGCCATCATTGATTCATTCCACAATGTACGATTAGCGGTTGTCATATTATGTATTCCGTACTATGATAATATGAACACTGGAGAAACTAGAGATGAACGAAAAAGAGAGTGA 2670 44.61 MLMGRLISSRLQSFVQGAQKGLYGSAHYIVPPIKWARLLINLGLAIEQHWFSGPHKKLISSFVVSEIRVSASCSPFVALPAGSRLNKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLVQFGAISSHASLELYYGLDHSSIRVNERSYLSRGTTAACNLAIAILLIFSFSLANAEKPCRPISTRHLRIGPFHLKWARLLINLGLPRTEAAALFFPHKTHLLFNSYSLKLGFPLLVRWSYPRSRLPIPKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGYPCMDDCILTLNKFATPTQRTDPTSTCSLHLSPSSVNKLPLGTIAFSPPPPSLCGPQFPFSLIPFPLRFRWRPLSSLLLPPPLRLHVPHLKTRRFSLLSVYYRFRSYGKSNLGSCCVSFDHDKNHPFAKTKSLSRISMVASINVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVETLMLERGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYFPGAKVLISSPSWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMMSDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLNADAASVRLFAARGLELLVAQSYSKNLGLYAERIGAINVVCSSTDSATRVKSQLKRLARPMYSNPPVHGARIVANIVGDPALFNEWKTEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVRLAVVILCIPYYDNMNTGETRDERKRE 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26951304 26961415 - CcPI632755_08g015300.1 Cco08g1530 186004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1530 889 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 267 318 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco08g1530 889 Gene3D Aspartate Aminotransferase, domain 1 466 855 IPR015422 -
Cco08g1530 889 FunFam Aspartate aminotransferase 748 855 - -
Cco08g1530 889 FunFam 60S ribosomal protein-like L39 267 317 - -
Cco08g1530 889 Gene3D Ribosomal protein L39e 267 317 IPR023626 -
Cco08g1530 889 PRINTS Aspartate aminotransferase signature 667 679 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cco08g1530 889 PRINTS Aspartate aminotransferase signature 735 760 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cco08g1530 889 PRINTS Aspartate aminotransferase signature 636 655 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cco08g1530 889 PRINTS Aspartate aminotransferase signature 804 822 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cco08g1530 889 FunFam Aspartate aminotransferase 521 762 - -
Cco08g1530 889 Gene3D Ribosomal protein L39e 88 137 IPR023626 -
Cco08g1530 889 Gene3D - 521 762 IPR015421 -
Cco08g1530 889 ProSitePatterns Ribosomal protein L39e signature. 117 133 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco08g1530 889 ProSitePatterns Ribosomal protein L39e signature. 296 312 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco08g1530 889 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 88 139 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco08g1530 889 SUPERFAMILY Ribosomal protein L39e 90 136 IPR023626 -
Cco08g1530 889 FunFam 60S ribosomal protein-like L39 88 137 - -
Cco08g1530 889 Pfam Ribosomal L39 protein 275 315 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco08g1530 889 Pfam Ribosomal L39 protein 96 136 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco08g1530 889 SUPERFAMILY PLP-dependent transferases 461 857 IPR015424 -
Cco08g1530 889 Pfam Aminotransferase class I and II 488 855 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cco08g1530 889 CDD AAT_like 490 855 - -
Cco08g1530 889 SUPERFAMILY Ribosomal protein L39e 269 316 IPR023626 -
Cco08g1530 889 PANTHER ASPARTATE AMINOTRANSFERASE 445 862 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cco08g1530 889 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 705 718 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1530 K00811 - - csv:101213342 846.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0831 Cco-Chr4:23806861 Cco08g1530 Cco-Chr8:26951304 4.40E-105 transposed
Cco07g0264 Cco-Chr7:2676762 Cco08g1530 Cco-Chr8:26951304 1.10E-108 transposed
Cco11g1457 Cco-Chr11:27374566 Cco08g1530 Cco-Chr8:26951304 2.50E-127 transposed
Cco05g1885 Cco-Chr5:27888543 Cco08g1530 Cco-Chr8:26951304 3.50E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g325 Blo01g01369 Blo12g00761 . Bda03g00424 . Bpe02g00176 Bma04g00400 Bma01g02550 . . Cma01g01602 . Car09g00487 . . . Cpe06g00422 . . . . . . . . . . . . . . Cone4ag1531 Cone7ag1422 . . Lsi04g02230 Csa03g04441 Chy04g00259 . . . . . . Bpe04g00072 . . Sed05g1604 Cmo01g01649 Cmo09g00545 Cma09g00555 . Car01g01222 . . Cpe02g00376 Bhi09g02426 Tan01g3784 Cmetu04g1897 . Hepe01g2123 Mch11g0661 . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . Cme04g00290
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006495 1 2 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 2 1 37