Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1531 ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATCCGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACGAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGCTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTGGCATCCGGCATTGCTCCGGTCGAGCGAGTGGAAGCGGATACAACGACGGTGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGACGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA 543 51.57 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDFSVASGIAPVERVEADTTTVKKVKLESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRSASVVQPQPI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26971959 26972589 + CcPI632755_08g015310.1 Cco08g1531 186005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1531 180 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cco08g1531 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1531 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 117 IPR050913 -
Cco08g1531 180 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1531 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1531 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1531 180 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1531 180 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1531 180 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cco08g1531 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1345 Cco-Chr7:27552298 Cco08g1531 Cco-Chr8:26971959 3.50E-27 dispersed
Cco08g1531 Cco-Chr8:26971959 Cco09g0309 Cco-Chr9:2705837 8.80E-44 dispersed
Cco08g1531 Cco-Chr8:26971959 Cco08g1532 Cco-Chr8:26979231 1.60E-53 tandem
Cco07g1322 Cco-Chr7:27300801 Cco08g1531 Cco-Chr8:26971959 7.00E-38 transposed
Cco05g1884 Cco-Chr5:27879990 Cco08g1531 Cco-Chr8:26971959 1.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59821 PF00847 AP2 1.90E-11 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1531 - - - 0.0